GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 11:23:50, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Lotus japonicus genomic DNA, chromosome 5, clone: LjT46H07, TM0909.
AP010642.1:78228-78247
AAAATAAAAATAAATTAACACTATAATTAA78228CGAATACATGCCAATTTCAATGGTTTATTGGAATGGAGAGAAAATGATAA
Lotus japonicus genomic DNA, chromosome 5, clone: LjT45M19, TM1126b.
AP010529.1:7078-7097
AAAATAAAAATAAATTAACACTATAATTAA7078CGAATACATGCCAATTTCAATGGTTTATTGGAATGGAGAGAAAATGATAA
Xestia xanthographa genome assembly, chromosome: 3.
LR990644.1:22170963-22170982
ATGCAATATTTTGTGGAGTACACTGAAAGA22170963CGAATACATGCCAATTTCAACGACGGAATTTCCCCAATTGTATTGGTGCA
Callimorpha dominula genome assembly, chromosome: 4.
OX456994.1:19433189-19433208
CGAAACATGTTGTACAAGCCAAGACGGGTT19433189CGAATACATGCCAATTTCAATAACAGCAATAACAGTTCATACAAGAGATT
Xanthostigma xanthostigma genome assembly, chromosome: 10.
OY754473.1:14236119-14236138
ATGCAAAATTTTGTGGAGTACACTAAAAGA14236119CGAATACATGCCAATTTCAACGACGGAGAAATTGTACGAAATTGCTGAAA
Lotus japonicus B-129 DNA, chromosome 5, complete sequence.
AP022633.1:56638784-56638803
TTATCATTTTCTCTCCATTCCAATAAACCA56638784TTGAAATTGGCATGTATTCGTTAATTATAGTGTTAATTTATTTTTATTTT
Lotus japonicus Fe-superoxide dismutase 2 precursor (sodB) gene, complete cds.
AY525604.1:704-723
TTATCATTTTCTCTCCATTCCAATAAACCA704TTGAAATTGGCATGTATTCGTTAATTATAGTGTTAATTTATTTTTATTTT
Clusia tigrina genome assembly, chromosome: 1.
OV050030.1:105667258-105667277
TCTATCCAGTCCCCACATCTCCAATTTGGT105667258TTGAAATTGGCATGTATTCGACGAGCCCTCTCTGTCAGATCACTTGCATA
Melanchra persicariae genome assembly, chromosome: 30.
OX376673.1:6226211-6226230
TATCTGCAATTTCGTACCATTTCTCCATCG6226211TTGAAATTGGCATGTATTCGTCTTTCAGTGTATTCCACAAAATGTTGCAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CGAATACATGCCAATTTCAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CGAATACATGCCAATTTCAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.105 | 0.096 | search_plus_done; http://172.18.8.135:50400/match?q=CGAATACATGCCAATTTCAA&k=0&no_gap=0&offset=0&limit=50
0.142 | 0.037 | search_minus_done; http://172.18.8.135:50400/match?q=TTGAAATTGGCATGTATTCG&k=0&no_gap=0&offset=0&limit=45
0.144 | 0.003 | cgi_end;

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