GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 08:28:30, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

BOGKQ81TF BOGK Brassica oleracea genomic clone BOGKQ81, genomic survey sequence.
BH498100.1:669-688
AAACTCGGAGGAAAATACTGTTAGATGGAC669CGACAGAGGGTTCAAATGGTTCAAAGGATGCCATTAATGGAGGCGACAAC
Brassica napus cultivar Xiang5A chromosome 9.
CP123884.1:58082704-58082723
AAACTCGGAGGAAAATACTGTTAGATGGAC58082704CGACAGAGGGTTCAAATGGTTCAAAGGATGCCATTAATGGAGGCGACAAC
Autographa gamma genome assembly, chromosome: 26.
LR989875.1:5392013-5392032
CATTGAGCTGTTTGATAGAACTAATAGAAC5392013CGACAGAGGGTTCAAATGGTTTGCAGACCTTCTCGCCGCGTATGGGACTA
Brassica napus cultivar Xiang5A chromosome 1.
CP123876.1:6350360-6350379
GTTGTCGCCTCCATTAATGGCATCCTTTGA6350360ACCATTTGAACCCTCTGTCGGTCCATCTACCATTATTTTCCTCCGAGTTT
Brassica napus genome assembly, chromosome: A02.
HG994356.1:6082909-6082928
GTTGTCGCCTCCATTAATGGCATCCTTTGA6082909ACCATTTGAACCCTCTGTCGGTCCATCTACCATTATTTTCCTCCGAGTTT
Brassica napus genome assembly, chromosome: C02.
HG994366.1:8579781-8579800
GTTGTCGCCTCCATTAATGGCATCCTTTGA8579781ACCATTTGAACCCTCTGTCGGTCCATCTAACAGTATTTTCCTCCGAGTTT
Brassica rapa genome, scaffold: A02.
LR031573.1:5968105-5968124
GTTGTCGCCTCCATTAATGGCATCCTTTGA5968105ACCATTTGAACCCTCTGTCGGTCCATCTACCATTATTTTCCTCCGAGTTT
Brassica oleracea HDEM genome, scaffold: C2.
LR031874.1:10141335-10141354
GTTGTCGCCTCCATTAATGGCATCCTTTGA10141335ACCATTTGAACCCTCTGTCGGTCCATCTAACAGTATTTTCCTCCGAGTTT
Brassica rapa genome assembly, chromosome: A02.
LS974618.2:6137865-6137884
GTTGTCGCCTCCATTAATGGCATCCTTTGA6137865ACCATTTGAACCCTCTGTCGGTCCATCTACCATTATTTTCCTCCGAGTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CGACAGAGGGTTCAAATGGT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CGACAGAGGGTTCAAATGGT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.105 | 0.096 | search_plus_done; http://172.18.8.135:50400/match?q=CGACAGAGGGTTCAAATGGT&k=0&no_gap=0&offset=0&limit=50
0.141 | 0.036 | search_minus_done; http://172.18.8.135:50400/match?q=ACCATTTGAACCCTCTGTCG&k=0&no_gap=0&offset=0&limit=47
0.145 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).