GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 02:36:10, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Coffea arabica microsatellite DNA, clone ZapII.32.
AJ250258.1:190-209
CACACACACACACACACACACACACACACA190CGAGAACACAGAAAACCCAGAAAAAAGAAAAGCACGAATTCGATATCAAG
Coffea arabica microsatellite DNA, clone 34-2CTG.
AJ308755.1:190-209
CACACACACACACACACACACACACACACA190CGAGAACACAGAAAACCCAGAAAAAAGAAAAGCACG
Inga laurina genome assembly, chromosome: 5.
OY979705.1:27427333-27427352
CTAACAAGTAAGGCATAAGAAGTGCTCACC27427333CGAGAACACAGAAAACCCAGATCCAGAAGTGTACTCGAGCACTAGCTCTG
Acomys kempi genome assembly, chromosome: 5.
OU015359.1:30075317-30075336
CTTTCTCTAAGTCTAGCCCTCTTAGCGCCT30075317CTGGGTTTTCTGTGTTCTCGCCCTGCCCTGCCCATGTGTATCTCTGACAC
Coffea arabica microsatellite DNA, clone 12-4CTG.
AJ308790.1:17-36
CGTGCTTTTCTTTTTT17CTGGGTTTTCTGTGTTCTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
Coffea arabica microsatellite DNA, clone 12-4CTG.
AJ308796.1:17-36
CGTGCTTTTCTTTTTT17CTGGGTTTTCTGTGTTCTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
Inga oerstediana genome assembly, chromosome: 13.
OY723411.1:38810389-38810408
CAGAGCTAGTGCTCGAGTGCATTTATGGCT38810389CTGGGTTTTCTGTGTTCTCGGGTGAGCACTTCTTGTGCCTTACTTGGTGG
Macrobrachium nipponense isolate FS-2020 chromosome 9.
CP062053.1:25879892-25879911
CGGCCTCATCAATGTGTGTGCCCCGGAATT25879892CTGGGTTTTCTGTGTTCTCGATTTTTGGCTTCGGTAGCGACCAATCACCA
Anisus vortex genome assembly, chromosome: 10.
OX421501.1:21059620-21059639
CTCTATGAAGCGGAACATCCACGAGTCTCT21059620CTGGGTTTTCTGTGTTCTCGCGGAGGGAACAGCTCTTGCACATTTGTGTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CGAGAACACAGAAAACCCAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CGAGAACACAGAAAACCCAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.095 | 0.087 | search_plus_done; http://172.18.8.135:50400/match?q=CGAGAACACAGAAAACCCAG&k=0&no_gap=0&offset=0&limit=50
0.115 | 0.019 | search_minus_done; http://172.18.8.135:50400/match?q=CTGGGTTTTCTGTGTTCTCG&k=0&no_gap=0&offset=0&limit=47
0.119 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).