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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-16 13:14:33, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

020902AARA012372HT (AARA) Royal Gala partially senescing leaf Malus domestica cDNA clone AARA012372, mRNA sequence.
CN877940.1:381-405
AGCCATGAAGCACAAGTGATCGAAAGGAAT381CGATAAAGATCGATAATCCTCATGCATAATCTGTTATCATTGTTATTTATTTTTT
Mddb5027p16.y1 Mddb Malus domestica cDNA clone Mddb5027p16 5' similar to TR:O48597 O48597 CYCLIN-DEPENDENT KINASE INHIBITOR PROTEIN, mRNA sequence.
CV084380.1:641-665
AGCCATGAAGCACAAGTGATCGAAAGGAAT641CGATAAAGATCGATAATCCTCATGCATAATCTGTTATCATTGTTATTTATTTTTT
TSA: Pyrus pyrifolia mRNA, contig: contig_57.
FX395089.1:287-311
AGCCATGAAACACTAGTGATCGAAAGGAAT287CGATAAAGATCGATAATCCTCATGCATAATCTGTTATCATTGTTAATTTTTTTAA
TSA: Pyrus pyrifolia mRNA, contig: contig_6388revcomp.
FX433673.1:133-157
AGCCATGAAACAATAGTGATCGAAAGGAAT133CGATAAAGATCGATAATCCTCATGCATAATCTGTTATCATTGTTAATTTTTTTTA
TSA: Pyrus communis mRNA, contig: lc25062.
FX633444.1:317-341
AGCCATGAAACACTAGTGATCGAAAGGAAT317CGATAAAGATCGATAATCCTCATGCATAATCTGTTATCATTGTTAANAANAGGTT
Malus hybrid cultivar cultivar Royalty chromosome 2.
CP141954.1:13456077-13456101
AGCCATGAAGCACAAGTGATCGAAAGGAAT13456077CGATAAAGATCGATAATCCTCATGCATAATCTGTTATCATTGTTATTTTTTTTTA
Malus hybrid cultivar cultivar Royalty chromosome 2.
CP141971.1:14160528-14160552
AGCCATGAAGCACAAGTGATCGAAAGGAAT14160528CGATAAAGATCGATAATCCTCATGCATAATCTGTTATCATTGTTATTTTTTTTTA
Malus hybrid cultivar cultivar SH6 chromosome 2.
CP143359.1:14129404-14129428
AGCCATGAAGCACAAGTGATCGAAAGGAAT14129404CGATAAAGATCGATAATCCTCATGCATAATCTGTTATCATTGTTATTTATTTTTT
Malus hybrid cultivar cultivar SH6 chromosome 2.
CP143376.1:13774978-13775002
AGCCATGAAGCACAAGTGATCGAAAGGAAT13774978CGATAAAGATCGATAATCCTCATGCATAATCTGTTATCATTGTTAATTTTTTTTT
Malus sylvestris genome assembly, chromosome: 2.
OU696504.1:13841937-13841961
AGCCATGAAGCACAAGTGATCGAAAGGAAT13841937CGATAAAGATCGATAATCCTCATGCATAATCTGTTATCATTGTTAATTTTTTTTT
Malus domestica genome assembly, chromosome: 2.
OU696678.1:14081289-14081313
AGCCATGAAGCACAAGTGATCGAAAGGAAT14081289CGATAAAGATCGATAATCCTCATGCATAATCTGTTATCATTGTTATTTATTTTTT
Malus domestica genome assembly, chromosome: 2.
OU744543.1:14080302-14080326
AGCCATGAAGCACAAGTGATCGAAAGGAAT14080302CGATAAAGATCGATAATCCTCATGCATAATCTGTTATCATTGTTAATTTTTTTTT
Malus domestica genome assembly, chromosome: 2.
OU744954.1:13636682-13636706
AGCCATGAAGCACAAGTGATCGAAAGGAAT13636682CGATAAAGATCGATAATCCTCATGCATAATCTGTTATCATTGTTAATTTTTTTTT
Malus domestica genome assembly, chromosome: 2.
OU744992.1:14089839-14089863
AGCCATGAAGCACAAGTGATCGAAAGGAAT14089839CGATAAAGATCGATAATCCTCATGCATAATCTGTTATCATTGTTATTTATTTTTT
Pyrus communis genome assembly, chromosome: 10.
OY757077.1:10719485-10719509
AGCCATGAAACACTAGTGATCGAAAGGAAT10719485CGATAAAGATCGATAATCCTCATGCATAATCTGTTATCATTGTTAATTTTTTTTA
Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH062_02021m, 5' end sequence.
AB450733.1:228-252
TAAAAAAAATTAACAATGATAACAGATTAT228GCATGAGGATTATCGATCTTTATCGATTCCTTTCGATCACTAGTGTTTCATGGCT
Mdfw2001e09.x1 Mdfw Malus domestica cDNA clone Mdfw2001e09 3' similar to TR:O48597 O48597 CYCLIN-DEPENDENT KINASE INHIBITOR PROTEIN, mRNA sequence.
CN443868.1:247-271
AAAAAATAAATAACAATGATAACAGATTAT247GCATGAGGATTATCGATCTTTATCGATTCCTTTCGATCACTTGTGCTTCATGGCT
000530AYFB001955HT (AYFB) Royal Gala 10 DAFB fruit Malus domestica cDNA clone AYFB001955, mRNA sequence.
CN949567.1:230-254
AAAAAATAAATAACAATGATAACAGATTAT230GCATGAGGATTATCGATCTTTATCGATTCCTTTCGATCACTTGTGCCCTCGTGCC
Mdfwj2079C07_e22536.g1 Apple_EST_Mdfwj Malus domestica cDNA 5' similar to dbj|BAB20860.1| cyclin dependent kinase inhibitor [Pisum sativum], mRNA sequence.
GO561061.1:250-274
AAAAAATAAATAACAATGATAACAGATTAT250GCATGAGGATTATCGATCTTTATCGATTCCTTTCGATCACTTGTGCTTCATGGCT
Mdfw2001E09_e12959.g1 Mdfw Malus domestica cDNA 5' similar to dbj|BAB20860.1| cyclin dependent kinase inhibitor [Pisum sativum], mRNA sequence.
GO567895.1:250-274
AAAAAATAAATAACAATGATAACAGATTAT250GCATGAGGATTATCGATCTTTATCGATTCCTTTCGATCACTTGTGCTTCATGGCT
Pyrus pyrifolia mRNA, clone: NFW2_10_21, 5' end sequence, expressed in flower bud.
HX762795.1:244-268
TAAAAAAAATTAACAATGATAACAGATTAT244GCATGAGGATTATCGATCTTTATCGATTCCTTTCGATCACTAGTGTTTCATGGCT
TSA: Pyrus x bretschneideri Unigene2886_XinShao mRNA sequence.
JR598200.1:145-169
TAAAAAAAATTAACAATGATAACAGATTAT145GCATGAGGATTATCGATCTTTATCGATTCCTTTCGATCACTAGTGTTTCATGGCT
TSA: Pyrus x bretschneideri Unigene17243_XinShao mRNA sequence.
JR612041.1:145-169
TAAAAAAAATTAACAATGATAACAGATTAT145GCATGAGGATTATCGATCTTTATCGATTCCTTTCGATCACTAGTGTTTCATGGCT
TSA: Pyrus x bretschneideri Unigene38092_XinShao mRNA sequence.
JR630243.1:145-169
TAAAAAAAATTAACAATGATAACAGATTAT145GCATGAGGATTATCGATCTTTATCGATTCCTTTCGATCACTAGTGTTTCATGGCT
TSA: Pyrus x bretschneideri Unigene38093_XinShao mRNA sequence.
JR630244.1:145-169
TAAAAAAAATTAACAATGATAACAGATTAT145GCATGAGGATTATCGATCTTTATCGATTCCTTTCGATCACTAGTGTTTCATGGCT
Pyrus pyrifolia mRNA, clone: NFW2_10_21, expressed in flower.
AK424213.1:228-252
TAAAAAAAATTAACAATGATAACAGATTAT228GCATGAGGATTATCGATCTTTATCGATTCCTTTCGATCACTAGTGTTTCATGGCT
Malus hybrid cultivar cultivar Flame chromosome 2.
CP141911.1:21961492-21961516
TAAAAAAAAATAACAATGATAACAGATTAT21961492GCATGAGGATTATCGATCTTTATCGATTCCTTTCGATCACTTGTGCTTCATGGCT
Malus hybrid cultivar cultivar Flame chromosome 2.
CP141928.1:24146230-24146254
AAAAAATAAATAACAATGATAACAGATTAT24146230GCATGAGGATTATCGATCTTTATCGATTCCTTTCGATCACTTGTGCTTCATGGCT
Malus x robusta genome assembly, chromosome: 7.
OY720331.1:22785428-22785452
TAAAAAAAAATAACAATGATAACAGATTAT22785428GCATGAGGATTATCGATCTTTATCGATTCCTTTCGATCACTTGTGCTTCATGGCT

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