GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 06:57:42, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Raphanus sativus var. sativus RNA, contig: WG3_2873.
FX658076.1:888-909
TAGCATTCACAGTATCATTGGTACCGTGAA888CGATATTAAGAACCCCGTCAGGTAGTCCAGCTTCCATTGCGAGCTCCGCAAG
TSA: Raphanus sativus RS14839 mRNA sequence.
JT799386.1:1027-1048
TAGCATTCACAGTATCATTGGTACCGTGAA1027CGATATTAAGAACCCCGTCAGGTAGTCCAGCTTCCATTGCGAGCTCCGCAAG
RS1DB74TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EY930517.1:516-537
CTTGCGGAGTTCGCAATGGAAGCTGGACTA516CCTGACGGGGTTCTTAATATCGTTCACGGTACCAATGATACTGTGAATGCTA
RS1E157TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EY932810.1:299-320
CTTGCGGAGTTCGCAATGGAAGCTGGACTA299CCTGACGGGGTTCTTAATATCGTTCACGGTACCAATGATACTGTGAATGCTA
RS2GY57TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD948423.1:692-713
CTTGCGGAGCTCGCAATGGAAGCTGGACTA692CCTGACGGGGTTCTTAATATCGTTCACGGTACCAATGATACTGTGAATGCTA
Raphanus sativus mRNA, clone: RSCF15O13, 5' end sequence.
FY431842.1:733-754
CTTGCGGAGTTCGCAATGGAAGCTGGACTA733CCTGACGGGGTTCTTAATATCGTTCACGGTACCAATGATACTGTGAATGCTA
Raphanus sativus mRNA, clone: RSCL13B08, 5' end sequence.
FY437202.1:715-736
CTTGCGGAGTTCGCAATGGAAGCTGGACTA715CCTGACGGGGTTCTTAATATCGTTCACGGTACCAATGATACTGTGAATGCTA
Raphanus sativus mRNA, clone: RSCS03A17, 5' end sequence.
FY446900.1:300-321
CTTGCGGAGTTCGCAATGGAAGCTGGACTA300CCTGACGGGGTTCTTAATATCGTTCACGGTACCAATGATACTGTGAATGCTA
Raphanus sativus mRNA, clone: RSCS03M23, 5' end sequence.
FY447167.1:206-227
CTTGCGGAGTTCGCAATGGAAGCTGGACTA206CCTGACGGGGTTCTTAATATCGTTCACGGTACCAATGATACTGTGAATGCTA
Raphanus sativus mRNA, clone: RSCS04J03, 5' end sequence.
FY447414.1:664-685
CTTGCGGAGTTCGCAATGGAAGCTGGACTA664CCTGACGGGGTTCTTAATATCGTTCACGGTACCAATGATACT
Raphanus sativus mRNA, clone: RSCS05B16, 5' end sequence.
FY447595.1:639-660
CTTGCGGAGTTCGCAATGGAAGCTGGACTA639CCTGACGGGGTTCTTAATATCGTTCACGGTACCAATGATACTGTGAATGCTA
Raphanus sativus mRNA, clone: RSCS12G07, 5' end sequence.
FY450150.1:504-525
CTTGCGGAGTTCGCAATGGAAGCTGGACTA504CCTGACGGGGTTCTTAATATCGTTCACGGTACCAATGATACTGTGAATGCTA
Raphanus sativus mRNA, clone: RSCS14J21, 5' end sequence.
FY450942.1:392-413
CTTGCGGAGTTCGCAATGGAAGCTGGACTA392CCTGACGGGGTTCTTAATATCGTTCACGGTACCAATGATACTGTGAATGCTA
Raphanus sativus mRNA, clone: RSCS15B02, 5' end sequence.
FY451105.1:649-670
CTTGCGGAGTTCGCAATGGAAGCTGGACTA649CCTGACGGGGTTCTTAATATCGTTCACGGTACCAATGATACTGTGAATGCTA
Raphanus sativus mRNA, clone: RSCS15L03, 5' end sequence.
FY451325.1:84-105
CTTGCGGAGTTCGCAATGGAAGCTGGACTA84CCTGACGGGGTTCTTAATATCGTTCACGGTACCAATGATACTGTGAATGCTA
Raphanus sativus mRNA, clone: RSCS18C24, 5' end sequence.
FY452216.1:639-660
CTTGCGGAGTTCGCAATGGAAGCTGGACTA639CCTGACGGGGTTCTTAATATCGTTCACGGTACCAATGATACTGTGAATGCTA
Raphanus sativus mRNA, clone: RSCS20P19, 5' end sequence.
FY453234.1:372-393
CTTGCGGAGTTCGCAATGGAAGCTGGACTA372CCTGACGGGGTTCTTAATATCGTTCACGGTACCAATGATACTGTGAATGCTA
Raphanus sativus mRNA, clone: RSCS22H08, 5' end sequence.
FY453755.1:613-634
CTTGCGGAGTTCGCAATGGAAGCTGGACTA613CCTGACGGGGTTCTTAATATCGTTCACGGTACCAATGATACTGTGAATGCTA
Raphanus sativus genome assembly, chromosome: 3.
LR778312.1:33775908-33775929
CTTGCGGAGCTCGCAATGGAAGCTGGACTA33775908CCTGACGGGGTTCTTAATATCGTTCACGGTACCAATGTAGGTTTATGCTTAA
Raphanus sativus genome assembly, chromosome: 9.
OY743206.1:33775908-33775929
CTTGCGGAGCTCGCAATGGAAGCTGGACTA33775908CCTGACGGGGTTCTTAATATCGTTCACGGTACCAATGTAGGTTTATGCTTAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CGATATTAAGAACCCCGTCAGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CGATATTAAGAACCCCGTCAGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.107 | 0.098 | search_plus_done; http://172.18.8.135:50400/match?q=CGATATTAAGAACCCCGTCAGG&k=0&no_gap=0&offset=0&limit=50
1.484 | 1.377 | search_minus_done; http://172.18.8.135:50400/match?q=CCTGACGGGGTTCTTAATATCG&k=0&no_gap=0&offset=0&limit=48
1.496 | 0.012 | cgi_end;

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