GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 15:28:00, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Trifolium repens isolate ACLI19 chromosome 03_Occ.
CP125840.1:30835391-30835411
AATTCCTTGTTGGCGTTGACCTAATTTGAT30835391CGGAATTAGAGCATGAAGCCATCGGAGAGAGAAAGGAACCATGGATCCGAC
Trifolium repens isolate ACLI19 chromosome 03_Pall.
CP125841.1:34567711-34567731
AATTCCTTGTTGGCGTTGACCTAATTTGAT34567711CGGAATTAGAGCATGAAGCCATCGGAGAGAGAAAGGAACCATGGATCCGAC
Trifolium repens mRNA, clone: WCC20j13, unspecified EST.
FY461162.1:350-370
GTCGGATCCATGGTTCCTTTCTCTCTCCGA350TGGCTTCATGCTCTAATTCCGATCAAATTAGGTCAACGCCAACAAGGAATT
Trifolium fragiferum genome assembly, chromosome: 6.
OX940794.1:54897652-54897672
GTCGGATCCATGGTTCCTTTCTCTCTCCGA54897652TGGCTTCATGCTCTAATTCCGATCAAATTAGGTCAACGCCAACAAGGAATT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CGGAATTAGAGCATGAAGCCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CGGAATTAGAGCATGAAGCCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.095 | 0.087 | search_plus_done; http://172.18.8.135:50400/match?q=CGGAATTAGAGCATGAAGCCA&k=0&no_gap=0&offset=0&limit=50
0.191 | 0.095 | search_minus_done; http://172.18.8.135:50400/match?q=TGGCTTCATGCTCTAATTCCG&k=0&no_gap=0&offset=0&limit=48
0.192 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).