GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-15 03:50:38, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

RS2AO09TFB RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EW724429.1:347-368
TCCAGTGCTTCCCGCTTCAGCAGGGTATGG347CGGCTTCACGTAAAGAGACAGAGGAAGTCATATTCGGAGCGCTTGACAATCT
RR4BY07TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EX770986.1:447-468
TCCAGTGCTCCCCGCTTCAGCAGGGTATGG447CGGCTTCACGTAAAGAGACAGAGGAAGTCATATTCGGAGCGCTTGACAATCT
RS2C753TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EX896523.1:123-144
TCCAGTGCTTCCCGCTTCAGCAGGGTATGG123CGGCTTCACGTAAAGAGACAGAGGAAGTCATATTCGGAGCGCTTGACAATCT
TSA: Raphanus sativus RS18189 mRNA sequence.
JT802736.1:438-459
TCCAGTGCTTCCCGCTTCAGCAGGGTATGG438CGGCTTCACGTAAAGAGACAGAGGAAGTCATATTCGGAGCGCTTGACAATCT
Barbarea vulgaris genome assembly, chromosome: 7.
OY763893.1:21150498-21150519
TTACTTGCTTTCCCCTTAAGCAAGACATGG21150498CGGCTTCACGTAAAGAGACAGAACAAGTAATATTCGGAGCTCTTGATAATCT
Cardamine chenopodiifolia genome assembly, chromosome: 19.
OZ000477.1:16067781-16067802
TTCAGTGCTTCCCTCTTCAGCAAGACATGG16067781CGGCTTCACGTAAAGAGACAGAACAAGTAATATTCGGAGCTCTTGACAATCT
Xanthogramma pedissequum genome assembly, chromosome: 4.
OU343163.1:71068564-71068585
TGTAGCAGCCTAGGGCCTCCGCTAAATGTT71068564CGGCTTCACGTAAAGAGACAGAACATTCCACGTGCAAATCCGAAGTTCGTTG
TSA: Raphanus sativus var. sativus RNA, contig: WG3_3799.
FX658946.1:983-1004
AGATTGTCAAGCGCTCCGAATATGACTTCC983TCTGTCTCTTTACGTGAAGCCGCCATACCCTGCTGAAGCGGGAAGCACTGGA
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:27833559-27833580
AGATTGTCAAGCGCTCCGAATATGACTTCC27833559TCTGTCTCTTTACGTGAAGCCGCCATACCCTGCTGAAGCGGGAAGCACTGGA
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:27833559-27833580
AGATTGTCAAGCGCTCCGAATATGACTTCC27833559TCTGTCTCTTTACGTGAAGCCGCCATACCCTGCTGAAGCGGGAAGCACTGGA
Nasturtium officinale genome assembly, chromosome: 10.
OY978508.1:1876706-1876727
AGATTATCAGTAGCTCCGAATATTACTTGT1876706TCTGTCTCTTTACGTGAAGCCGCCATGTCTTGCTGAAGGGGAAAGCATGTAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CGGCTTCACGTAAAGAGACAGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CGGCTTCACGTAAAGAGACAGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.306 | 0.297 | search_plus_done; http://172.18.8.135:50400/match?q=CGGCTTCACGTAAAGAGACAGA&k=0&no_gap=0&offset=0&limit=50
0.338 | 0.032 | search_minus_done; http://172.18.8.135:50400/match?q=TCTGTCTCTTTACGTGAAGCCG&k=0&no_gap=0&offset=0&limit=43
0.341 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).