GGGenome | Results

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2025-04-16 19:31:21, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

CGN-27245 Leaf Coffea canephora cDNA clone cccl5e10 5', mRNA sequence.
DV685797.1:375-397

AACTTGTGTCGACTTTTGTCTGCTAATCTT375GTATAGGCTGCCATTTCTTCCCGTCGCACTCCCTTGATGTTTTTCTTTCCCTC

CGN-29952 Leaf Coffea canephora cDNA clone cccl5e9 5', mRNA sequence.
DV687818.1:375-397

AACTTGTGTCGACTTTTGTCTGCTAATCTT375GTATAGGCTGCCATTTCTTCCCGTCGCACTCCCTTGATGTTTTTCTTTCCCTC

TransId-236093 CAET42MIX Coffea arabica cDNA clone CAET42MIX-CFEXE38TV similar to At5g58760 - Arabidopsis thaliana (Mouse-ear cress), mRNA sequence.
GT007769.1:560-582

AACTTGTGTCGACTTTTGTCTGCTAATCTT560GTATAGGCTGCCATTTCTTCCCGTCGCACTCCCTTGATGTTTTTCTTTCCCTC

CR00-XX-FR4-054-C04-SB.F Coffea racemosa FR4 Coffea racemosa cDNA clone CR00-XX-FR4-054-C04-SB, mRNA sequence.
GT658790.1:605-627

AACTTGTGTCGACTTTTGTCTGCTAATCTT605GTATAGGCTGCCATTTCTTCCCGTCGCACTCCTTTTGATGTTTTTCTTTCCCT

CA00-XX-RX1-010-G08-EB.F Coffea arabica RX1 Coffea arabica cDNA clone CA00-XX-RX1-010-G08-EB, mRNA sequence.
GT729650.1:127-149

AACTTGTGTCGACTTTTGTCTGCTAATCTT127GTATAGGCTGCCATTTCTTCCCGTCGCACTCCCTTGATGTTTTTCTTTCCCTC

CA00-XX-RX1-011-A08-EB.F Coffea arabica RX1 Coffea arabica cDNA clone CA00-XX-RX1-011-A08-EB, mRNA sequence.
GT729651.1:127-149

AACTTGTGTCGACTTTTGTCTGCTAATCTT127GTATAGGCTGCCATTTCTTCCCGTCGCACTCCCTTGATGTTTTTCTTTCCCTC

CA00-XX-RX1-036-E07-EB.F Coffea arabica RX1 Coffea arabica cDNA clone CA00-XX-RX1-036-E07-EB, mRNA sequence.
GT729652.1:331-353

AACTTGTGTCGACTTTTGTCTGCTAATCTT331GTATAGGCTGCCATTTCTTCCCGTCGCACTCCCTTGATGTTTTTCTTTCCCTC

CA00-XX-CB1-106-G05-RF.F Coffea arabica CB1 Coffea arabica cDNA clone CA00-XX-CB1-106-G05-RF, mRNA sequence.
GT732969.1:290-312

AACTTGTGTCGACTTTTGTCTGCTAATCTT290GTATAGGCTGCCATTTCTTCCCGTCGCACTCCCTTGATGTTTTTCTTTCCCTC

CA00-XX-CS1-091-B11-AB.F Coffea arabica CS1 Coffea arabica cDNA clone CA00-XX-CS1-091-B11-AB, mRNA sequence.
GW449873.1:305-327

AACTTGTGTCGACTTTTGTCTGCTAATCTT305GTATAGGCTGCCATTTCTTCCCGTCGCACTCCTTTGATGTTTTTCTTTCCCTC

CA00-XX-LV4-018-A07-SB.F Coffea arabica LV4 Coffea arabica cDNA clone CA00-XX-LV4-018-A07-SB, mRNA sequence.
GW488495.1:434-456

AACTTGTGTCGACTTTTGTCTGCTAATCTT434GTATAGGCTGCCATTTCTTCCCGTCGCACTCCTTTGATGTTTTTCTTTCCCTC

CCES33 Coffee EST-SSR sequence Coffea canephora STS cDNA, sequence tagged site.
GF110684.1:884-906

AACTTGTGTCGACTTTTGTCTGCTAATCTT884GTATAGGCTGCCATTTCTTCCCGTCGCACTCCCTTGATGTTTTTCTTTCCCTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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Debug Info:

0.009 | 0.009 | search_start;
0.108 | 0.099 | search_plus_done; http://172.18.8.135:50400/match?q=CGGGAAGAAATGGCAGCCTATAC&k=0&no_gap=0&offset=0&limit=50
0.844 | 0.736 | search_minus_done; http://172.18.8.135:50400/match?q=GTATAGGCTGCCATTTCTTCCCG&k=0&no_gap=0&offset=0&limit=50
0.852 | 0.007 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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