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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 03:03:24, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 22706 from patent US 7750207.
GX328631.1:683-702
TAACGAGATCCACGCTCGCGGTCATAATCA683CGGTCACCATTACGGTCTCTACCAGGTCCTTGTGGCTGAGCTTTATCAAC
Sequence 22707 from patent US 7750207.
GX328632.1:1451-1470
TAACGAGATCCACGCTCGCGGTCATAATCA1451CGGTCACCATTACGGTCTCTACCAGGTCCTTGTGGCTGAGCTTTATCAAC
Sequence 22708 from patent US 7750207.
GX328633.1:628-647
TAACGAGATCCACGCTCGCGGTCATAATCA628CGGTCACCATTACGGTCTCTACCAGGTCCTTGTGGCTGAGCTTTATCAAC
Sequence 22709 from patent US 7750207.
GX328634.1:5052-5071
TAACGAGATCCACGCTCGCGGTCATAATCA5052CGGTCACCATTACGGTCTCTACCAGGTCCTTGTGGCTGAGCTTTATCAAC
Sequence 22710 from patent US 7750207.
GX328635.1:823-842
TAACGAGATCCACGCTCGCGGTCATAATCA823CGGTCACCATTACGGTCTCTACCAGGTCCTTGTGGCTGAGCTTTATCAAC
605010D05.x1 605 - Endosperm cDNA library from Schmidt lab Zea mays cDNA, mRNA sequence.
AI665368.2:572-591
TAACGAGATCCACGCTCGCGGTCATAATCA572CGGTCACCATTACGGTCTCTACCAGGTCCTTGGGCTGAGC
605092C05.x1 605 - Endosperm cDNA library from Schmidt lab Zea mays cDNA, mRNA sequence.
AI833567.1:574-593
TAACGAGATCCACGCTCGCGGTCATAATCA574CGGTCACCATTACGGTCTCTACCAGGTCCTT
606067B06.x1 606 - Ear tissue cDNA library from Schmidt lab Zea mays cDNA, mRNA sequence.
AI834365.1:512-531
TAACGAGATCCACGCTCGCGGTCATAATCA512CGGTCACCATTACGGTCTCTACCAGGTCCTT
MEST520-F05.univ ISUM6 Zea mays cDNA clone MEST520-F05 3', mRNA sequence.
BM380488.1:522-541
TAACGAGATCCACGCTCGCGGTCATAATCA522CGGTCACCATTACGGTCTCTACCAGGTCCTTGTGGCTGAGCTTTATCAAC
1091032H06.x1 1091 - Immature ear with common ESTs screened by Schmidt lab Zea mays cDNA, mRNA sequence.
BQ279833.1:453-472
TAACGAGATCCACGCTCGCGGTCATAATCA453CGGTCACCATTACGGTCTCTACCAGGTCCTTGTGGCTGAGCTTTATCAAC
3529_1_123_1_F11.x_1 3529 - 2 mm ear tissue from Schmidt and Hake labs Zea mays cDNA, mRNA sequence.
CD527878.1:537-556
TAACGAGATCCACGCTCGCGGTCATAATCA537CGGTCACCATTACGGTCTCTACCAGGTCCTTGTGGCTGAGCTTTATCAAC
zmrws05_0B20-010-c02.s1 zmrws05 Zea mays cDNA 3', mRNA sequence.
CF627353.1:602-621
TAACGAGATCCACGCTCGCGGTCATAATCA602CGGTCACCATTACGGTCTCTACCAGGTCCTTGTGGCTGAGCTTTATCCAC
MEST1017_H05.T7-1 UGA-ZmSAM-XZ2 Zea mays cDNA, mRNA sequence.
DN229986.1:73-92
TAACGAGATCCACGCTCGCGGTCATAATCA73CGGTCACCATTACGGTCTCTACCAGGTCCTTGTGGCTGAGCTTTATCAAC
1000096-H07.T7-1 UGI-Reseq Zea mays cDNA, mRNA sequence.
DV493579.1:511-530
TAACGAGATCCACGCTCGCGGTCATAATCA511CGGTCACCATTACGGTCTCTACCAGGTCCTTGTGGCTGAGCTTTATCAAC
IV-1091-404C-E05.T7-1 UGIV-1091-Reseq Zea mays cDNA, mRNA sequence.
DV622383.1:500-519
TAACGAGATCCACGCTCGCGGTCATAATCA500CGGTCACCATTACGGTCTCTACCAGGTCCTTGTGGCTGAGCTTTATCAAC
MSAM089245_1883_0393 LCM-dissected maize inbred line Mo17 shoot apical meristem cDNA Zea mays cDNA, mRNA sequence.
EG062126.1:59-78
TAACGAGATCCACACTCACGGTCCTAATAA59CGGTCACCATTACGGTCTCTACCAGGTCCTTGTGGTTGAGCTTTATCGAC
CCXG1301.g1 CCXG Brachypodium distachyon superpool Brachypodium distachyon cDNA clone CCXG1301 3', mRNA sequence.
GT784158.1:493-512
TTACGAGATCCACGATCACGATCATAATCA493CGGTCACCATTACGGTCTCTACCAGCTCCTTGCGGCTGAGCTTTATCAAC
CCXG3409.g1 CCXG Brachypodium distachyon superpool Brachypodium distachyon cDNA clone CCXG3409 3', mRNA sequence.
GT787922.1:498-517
TTACGAGATCCACGATCACGATCATAATCA498CGGTCACCATTACGGTCTCTACCAGCTCCTTGCGGCTGAGCTTTATCAAC
CCXG5782.g1 CCXG Brachypodium distachyon superpool Brachypodium distachyon cDNA clone CCXG5782 3', mRNA sequence.
GT792369.1:538-557
TTACGAGATCCACGATCACGATTATAATCA538CGGTCACCATTACGGTCTCTACCAGCTCCTTGCGGCTGAGCTTTATCAAC
CCXG12958.g1 CCXG Brachypodium distachyon superpool Brachypodium distachyon cDNA clone CCXG12958 3', mRNA sequence.
GT804839.1:481-500
TTACGAGATCCACGATCACGATCATAATCA481CGGTCACCATTACGGTCTCTACCAGCTCCTTGCGGCTGAGCTTTATCAGC
CCYO2652.g1 CCYO Brachypodium distachyon flower + flower drought Brachypodium distachyon cDNA clone CCYO2652 3', mRNA sequence.
GT814774.1:560-579
TTACGAGATCCACGATCACGATCATAATCA560CGGTCACCATTACGGTCTCTACCAGCTCCTTGCGGCTGAGGCTTTATCAA
CCYO3550.g1 CCYO Brachypodium distachyon flower + flower drought Brachypodium distachyon cDNA clone CCYO3550 3', mRNA sequence.
GT816389.1:252-271
TTACGAGATCCACGATCACGATCATAATCA252CGGTCACCATTACGGTCTCTACCAGCTCCTTGCGGCTGAGCTTTATCAAC
CCYO6088.g1 CCYO Brachypodium distachyon flower + flower drought Brachypodium distachyon cDNA clone CCYO6088 3', mRNA sequence.
GT820654.1:260-279
TTACGAGATCCACGATCACGATCATAATCA260CGGTCACCATTACGGTCTCTACCAGCTCCTTGCGGCTGAGCTTTATCAAC
CCYO12334.g1 CCYO Brachypodium distachyon flower + flower drought Brachypodium distachyon cDNA clone CCYO12334 3', mRNA sequence.
GT829802.1:497-516
TTACGAGATCCACGATCACGATCATAATCA497CGGTCACCATTACGGTCTCTACCAGCTCCTTGCGGCTGAGCTTTATCAAC
CCYP11851.g1 CCYP Brachypodium distachyon leaf + leaf drought Brachypodium distachyon cDNA clone CCYP11851 3', mRNA sequence.
GT856988.1:493-512
TTACGAGATCCACGATCACGATCATAATCA493CGGTCACCATTACGGTCTCTACCAACTCCTTGCGGCTGAGCTTTATCAAC
PUHCD86TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa417P04, genomic survey sequence.
CC381174.1:773-792
TAACGAGATCCAAGCTCACAGTCATAATAA773CGGTCACCATTACGGTCTCTACCAGGTCCATGTGGCCGAGCTTTATCGAC
PUEJF05TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa264B10, genomic survey sequence.
CC445834.1:640-659
TAACGAGATCCACGCTCGCGGTCATAATCA640CGGTCACCATTACGGTCTCTACCAGGTCCTTGTGGCTGAGCTTTATCAAC
PUJGP82TB ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa0663N20, genomic survey sequence.
CG112705.1:160-179
TAACGAGATCCACGCTCGCGGTCATAATCA160CGGTCACCATTACGGTCTCTACCAGGTCCTTGTGGCTGAGCTTTATCAAC
ZMMBBb0644A21f ZMMBBb (HindIII) Zea mays subsp. mays genomic clone ZMMBBb0644A21 5', genomic survey sequence.
CL293049.1:687-706
TAACGAGATCCACGCTCGCGGTCATAATCA687CGGTCACCATTACGGTCTCTACCAGGTCCTTGTGGCTGAGCTTTATCAAC
HDE170A17.F HDE Setaria viridis genomic 5', genomic survey sequence.
KS162952.1:375-394
TAACGAGACCCACGCTCACGATCATAATCA375CGGTCACCATTACGGTCTCTACCAGGACCTTGTGGCTGAGCTTTATCAAC
Zea mays CL14723_1 mRNA sequence.
AY111102.1:601-620
TAACGAGATCCACGCTCGCGGTCATAATCA601CGGTCACCATTACGGTCTCTACCAGGTCCTTGTGGCTGAGCTTTATCAAC
Setaria viridis cultivar ME034v chromosome 9.
CP050803.1:5544729-5544748
TAACGAGATCCACGGTCACGATCAGAATCA5544729CGGTCACCATTACGGTCTCTACCAGGTCCTTGTGGCTGAGCTTTATCAAC
Cenchrus purpureus cultivar elephant grass chromosome B2.
CP053462.1:119589557-119589576
TAACGAGACCCACGGTCACGATCATAATCA119589557CGGTCACCATTACGGTCTCTACCAGAACCTTGTGGCTGAGCCTTGTCAAC
Paspalum notatum var. saurae isolate R1 chromosome 02.
CP144746.1:55785107-55785126
AAACGAGACCCACGGTCGCGATCATAATCA55785107CGGTCACCATTACGGTCTCTACCAGGTCCTTGTGGCTGAGCTTTATCAAC
Digitaria exilis genome assembly, chromosome: UA.
LR994622.1:10509859-10509878
CGGTCATAACGAGACCCACGATCATAATCA10509859CGGTCACCATTACGGTCTCTACCACCTCCTTGTGGCTGAGCTTTATCAAC
Avena insularis genome assembly, chromosome: 4D.
OU342348.1:350051824-350051843
TCACCACGAGATCCACGATCGCGATCATCA350051824CGGTCACCATTACGGTCTCTACCAGCTCCTTGAGGTTGAGCTTTATCAAC
Avena sativa genome assembly, chromosome: 4A.
OU342381.1:322255682-322255701
TCACCACGAGATCCACGATCGCGATCATCA322255682CGGTCACCATTACGGTCTCTACCAGCTCCTTGAGGTTGAGCTTTATCAAC
Avena sativa genome assembly, chromosome: 4D.
OU342395.1:306561404-306561423
TCACCACGAGATCCACGATCGCGATCATCA306561404CGGTCACCATTACGGTCTCTACCAGCTCCTTGAGGTTGAGCTTTATCAAC
Avena atlantica genome assembly, chromosome: 4A.
OU342736.1:416531096-416531115
TCACCACGAGATCCACGATCGCGATCATCA416531096CGGTCACCATTACGGTCTCTACCAGCTCCTTGAGGTTGAGCTTTATCAAC
Avena eriantha genome assembly, chromosome: 6C.
OU342745.1:537396942-537396961
TCACCACGAGATCCACGATCGCGATCATCA537396942CGGTCACCATTACGGTCTCTACCAACTCCTTGAGGTTGAGCTTTATCAAC
Avena longiglumis genome assembly, chromosome: 4A.
OU342750.1:394947335-394947354
TCACCACGAGATCCACGATCGCGATCATCA394947335CGGTCACCATTACGGTCTCTACCAGCTCCTTGAGGTTGAGCTTTATCAAC
Avena sativa genome assembly, chromosome: 4.
OV702282.1:318844548-318844567
TCACCACGAGATCCACGATCGCGATCATCA318844548CGGTCACCATTACGGTCTCTACCAGCTCCTTGAGGTTGAGCTTTATCAAC
Avena sativa genome assembly, chromosome: 18.
OV702296.1:343095880-343095899
TCACCACGAGATCCACGATCGCGATCATCA343095880CGGTCACCATTACGGTCTCTACCAGCTCCTTGAGGTTGAGCTTTATCAAC
Cenchrus americanus genome assembly, chromosome: PMC23DB2.
OX387240.1:15459494-15459513
TAACGAGATCCACGGTCACGATCATAATCA15459494CGGTCACCATTACGGTCTCTACCAGGTCCTTGTGGCTGAGCTTTATCAAC
Phragmites australis genome assembly, chromosome: 3.
OY282614.1:49361614-49361633
TAACGAGATCCACGCTCACGATCAAAATCA49361614CGGTCACCATTACGGTCTCTACCAGGTCCTTGTGGCTGCGCTTTATCAAC
Cenchrus americanus genome assembly, chromosome: Pg2.
OZ001398.1:15285104-15285123
TAACGAGATCCACGGTCACGATCATAATCA15285104CGGTCACCATTACGGTCTCTACCAGGTCCTTGTGGCTGAGCTTTATCAAC
Cenchrus americanus genome assembly, chromosome: Pg2.
OZ001406.1:16107200-16107219
TAACGAGATCCACGGTCACGATCATAATCA16107200CGGTCACCATTACGGTCTCTACCAGGTCCTTGTGGCTGAGCTTTATCAAC
Conger conger genome assembly, chromosome: 2.
OY741315.1:3505261-3505280
CGTAATGGTGACCGTAATGGTGACCGTACT3505261AGAGACCGTAATGGTGACCGTAATGGTGACCGTAATGGTGACCGTAATGG
Conger conger genome assembly, chromosome: 2.
OY741315.1:3505357-3505376
CGTAATAGTGACCGTACTAGAGACCGTACT3505357AGAGACCGTAATGGTGACCGTAATGGTGACCGTAATGGTGACTGTACTAG
Sequence 1758 from patent US 6476212.
AR246399.1:62-81
GNTGATANAGCTCAGCCACAAGGACCTGGT62AGAGACCGTAATGGTGACCGTGATTATGACCGCGAGCGTGGATCTCGTTA
Sequence 51779 from patent US 7560542.
GP643775.1:170-189
GTTGATAAAGCTCAGCCACAAGGACCTGGT170AGAGACCGTAATGGTGACCGTGATTATGACCGCGAGCGTGGATCTCGTTA
Sequence 8061 from patent US 7569389.
GP677687.1:358-377
GTTGATAAAGCTCAGCCACAAGGACCTGGT358AGAGACCGTAATGGTGACCGTGATTATGACCGCGAGCGTGGATCTCGTTA
605010D05.y1 605 - Endosperm cDNA library from Schmidt lab Zea mays cDNA, mRNA sequence.
AI795502.1:438-457
GTTGATAAAGCTCAGCCACAAGGACCTGGT438AGAGACCGTAATGGTGACCGTGATTATGACCGCGAGCGTGGATCTCGTTA
605092C05.y1 605 - Endosperm cDNA library from Schmidt lab Zea mays cDNA, mRNA sequence.
AI820357.1:365-384
GTTGATAAAGCTCAGCCACAAGGACCTGGT365AGAGACCGTAATGGTGACCGTGATTATGACCGCGAGCGTGGATCTCGTTA
606067B06.y1 606 - Ear tissue cDNA library from Schmidt lab Zea mays cDNA, mRNA sequence.
AI881368.1:426-445
GTTGATAAAGCTCAGCCACAAGGACCTGGT426AGAGACCGTAATGGTGACCGTGATTATGACCGCGAGCGTGGATCTCGTTA
TSA: Zea mays contig44289, mRNA sequence.
EZ108630.1:127-146
GTTGATAAAGCTCAGCCACAAGGACCCGGT127AGAGACCGTAATGGTGACCGTGATTATGACCGCGAGCGTGGATCTCGTTA
PUHCD86TB ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa417P04, genomic survey sequence.
CC381170.1:737-756
GTCGATAAAGCTCGGCCACATGGACCTGGT737AGAGACCGTAATGGTGACCGTTATTATGACTGTGAGCTTGGATCTCGTTA
Zea mays cultivar B73 chromosome 10 clone CH201-11B18, *** SEQUENCING IN PROGRESS ***, 31 unordered pieces.
AC191054.5:217981-218000
GTCGATAAAGCTCGGCCACATGGACCTAGT217981AGAGACCGTAATGGTGACCGTTATTATGACCGTGAGCTTGGATCTCGTTA
Zea mays cultivar B73 chromosome 1 clone ZMMBBb-257J19, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces.
AC196125.3:5312-5331
GTTGATAAAGCTCAGCCACAAGGACCTGGT5312AGAGACCGTAATGGTGACCGTGATTATGACCGCGAGCGTGGATCTCGTTA
Zea mays cultivar B73 chromosome 10 clone CH201-14N16, *** SEQUENCING IN PROGRESS ***, 25 unordered pieces.
AC210620.5:56909-56928
GTCGATAAAGCTCGGCCACATGGACCTAGT56909AGAGACCGTAATGGTGACCGTTATTATGACCGTGAGCTTGGATCTCGTTA
Zea mays full-length cDNA clone ZM_BFb0202K03 mRNA, complete cds.
BT087787.1:421-440
GTTGATAAAGCTCAGCCACAAGGACCTGGT421AGAGACCGTAATGGTGACCGTGATTATGACCGCGAGCGTGGATCTCGTTA
Setaria viridis cultivar ME034v chromosome 9.
CP050803.1:1107237-1107256
GTTGATAAAGCTCAGCCACAAGGTCCTGGT1107237AGAGACCGTAATGGTGACCGTGATTATGATCGTGAGCGTGGGTCTCGTTA
Cenchrus purpureus cultivar elephant grass chromosome A2.
CP053455.1:3487841-3487860
GTTGATAAAGCTCAGCCACAAGGACCTGGT3487841AGAGACCGTAATGGTGACCGTGATTATGATCGTGACCGTGGATCTCGTTA
Zea mays genome assembly, chromosome: 1.
LR897967.1:307992362-307992381
GTTGATAAAGCTCAGCCACAAGGACCTGGT307992362AGAGACCGTAATGGTGACCGTGATTATGACCGCGAGCGTGGATCTCGTTA
Zea mays genome assembly, chromosome: 8.
LR897974.1:13666221-13666240
GTCGATAAAGCTCGGCCACATGGACCTGGT13666221AGAGACCGTAATGGTGACCGTTATTATGACTGTGAGCTTGGATCTCGTTA
Zea mays genome assembly, chromosome: 10.
LR897976.1:128904331-128904350
GTCGATAAAGCTCGGCCACATGGACCTAGT128904331AGAGACCGTAATGGTGACCGTTATTATGACCGTGAGCTTGGATCTCGTTA
Avena insularis genome assembly, chromosome: 7C.
OU342344.1:13659869-13659888
GTTGATAAAGCTCAACCTCAAGGAGTTGGT13659869AGAGACCGTAATGGTGACCGTGATGATCGCGACCGTGGATCTCGTGGTGA
Avena sativa genome assembly, chromosome: 7C.
OU342391.1:12587581-12587600
GTTGATAAAGCTCAACCTCAAGGAGTTGGT12587581AGAGACCGTAATGGTGACCGTGATGATCGCGACCGTGGATCTCGTGGTGA
Avena sativa genome assembly, chromosome: 7C.
OU342391.1:12587974-12587993
GTTGATAAAGCTCAACCTCAAGGAGTTGGT12587974AGAGACCGTAATGGTGACCGTGATGATCGCGATCGTGGATCTCGTGGTGA
Cenchrus americanus genome assembly, chromosome: PMC23DB2.
OX387240.1:1452130-1452149
GTTGACAAAGCTCAGCCACAAGGTTCCGGT1452130AGAGACCGTAATGGTGACCGTGATTATGATCGTGAGCGTGGCTCTCGTTA
Phragmites australis genome assembly, chromosome: 4.
OY282615.1:1424146-1424165
GTTGATAAAGCTCAGCCACAAGGACCTGGT1424146AGAGACCGTAATGGTGACCGTGATTTTGATCGCGAGCGTGGATCTCGCCA
Cenchrus americanus genome assembly, chromosome: Pg2.
OZ001398.1:2461942-2461961
GTTGACAAAGCTCAGCCACAAGGTTCCGGT2461942AGAGACCGTAATGGTGACCGTGATTATGATCGTGAGCGTGGCTCTCGTTA
Cenchrus americanus genome assembly, chromosome: Pg2.
OZ001406.1:2701459-2701478
GTTGACAAAGCTCAGCCACAAGGTTCCGGT2701459AGAGACCGTAATGGTGACCGTGATTATGATCGTGAGCGTGGCTCTCGTTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CGGTCACCATTACGGTCTCT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CGGTCACCATTACGGTCTCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.412 | 1.403 | search_plus_done; http://172.18.8.135:50400/match?q=CGGTCACCATTACGGTCTCT&k=0&no_gap=0&offset=0&limit=50
1.540 | 0.128 | search_minus_done; http://172.18.8.135:50400/match?q=AGAGACCGTAATGGTGACCG&k=0&no_gap=0&offset=0&limit=3
1.556 | 0.016 | cgi_end;

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