GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-26 07:28:29, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

POD_009_D07 Phaseolus vulgaris pod EST library Phaseolus vulgaris cDNA 5', mRNA sequence.
CV538721.1:239-258
AAATAATAAAGGATCCAGGAGTTGAGGCTG239CGTTCCCAGGAGTTGATGATGGAACTACACCTGGAGATCCATTTGCACCA
UCRVU04_CCNI4053_g1 Cowpea 524B Mixed Tissue and Conditions cDNA Library UCRVU04-1-2 Vigna unguiculata cDNA clone CCNI4053.g1, mRNA sequence.
FG817287.1:256-275
CAACAGAAATTGGGATGCGTGCTGATGCTG256CGTTCCCAGGAGTTGATGATGGAGCTCCACCATTTGCAGCAGCAGATGTT
UCRVU04_CCNI6364_g1 Cowpea 524B Mixed Tissue and Conditions cDNA Library UCRVU04-1-2 Vigna unguiculata cDNA clone CCNI6364.g1, mRNA sequence.
FG821200.1:348-367
CAACAGAAATTGGGATGCGTGCTGATGCTG348CGTTCCCAGGAGTTGATGATGGAGCTCCACCATTTGCAGCAGCAGATGTT
UCRVU04_CCNI12764_g1 Cowpea 524B Mixed Tissue and Conditions cDNA Library UCRVU04-1-2 Vigna unguiculata cDNA clone CCNI12764.g1, mRNA sequence.
FG827978.1:274-293
CAACAGAAATTGGGATGCGTGCTGATGCTG274CGTTCCCAGGAGTTGATGATGGAGCTCCACCATTTGCAGCAGCAGATGTT
UCRVU04_CCNI13519_g1 Cowpea 524B Mixed Tissue and Conditions cDNA Library UCRVU04-1-2 Vigna unguiculata cDNA clone CCNI13519.g1, mRNA sequence.
FG829288.1:274-293
CAACAGAAATTGGGATGCGTGCTGATGCTG274CGTTCCCAGGAGTTGATGATGGAGCTCCACCATTTGCAGCAGCAGATGTT
UCRVU04_CCNI14379_g1 Cowpea 524B Mixed Tissue and Conditions cDNA Library UCRVU04-1-2 Vigna unguiculata cDNA clone CCNI14379.g1, mRNA sequence.
FG830742.1:259-278
CAACAGAAATTGGGATGCGTGCTGATGCTG259CGTTCCCAGGAGTTGATGATGGAGCTCCACCATTTGCAGCAGCAGATGTT
UCRVU05_CCNN5057_g1 Cowpea IT84S-2049 Mixed Tissue and Conditions cDNA Library UCRVU05-2-2 Vigna unguiculata cDNA clone CCNN5057.g1, mRNA sequence.
FG842244.1:261-280
CAACAGAAAATGGGATGCGTGCTGATGCTG261CGTTCCCAGGAGTTGATGATGGAGCTCCACCATTTGCAGCAGCAGATGTT
UCRVU05_CCNN6891_g1 Cowpea IT84S-2049 Mixed Tissue and Conditions cDNA Library UCRVU05-2-2 Vigna unguiculata cDNA clone CCNN6891.g1, mRNA sequence.
FG845381.1:470-489
CAACAGAAAATGGGATGCGTGCTGATGCTG470CGTTCCCAGGAGTTGATGATGGAGCTCCACCATTTGCAGCAGCAGATGTT
UCRVU05_CCNN19348_g1 Cowpea IT84S-2049 Mixed Tissue and Conditions cDNA Library UCRVU05-2-2 Vigna unguiculata cDNA clone CCNN19348.g1, mRNA sequence.
FG854765.1:470-489
CAACAGAAAATGGGATGCGTGCTGATGCTG470CGTTCCCAGGAGTTGATGATGGAGCTCCACCATTTGCAGCAGCAGATGTT
UCRVU07_CCNP5060_g1 Cowpea UCR 779 Mixed Tissue and Conditions cDNA Library UCRVU07-1-2 Vigna unguiculata cDNA clone CCNP5060.g1, mRNA sequence.
FG868158.1:291-310
GGGGAGAAAATGGGATGCGTGGGGGGGGGG291CGTTCCCAGGAGTTGATGATGGAGCTCCACCATTTGCAGCAGCAGATGTT
UCRVU08_CCNS1200_g1 Cowpea IT97K-461-4 Mixed Tissue and Conditions cDNA Library UCRVU08-1-2 Vigna unguiculata cDNA clone CCNS1200.g1, mRNA sequence.
FG891910.1:274-293
CAACAGAAAATGGGATGCGTGCTGATGCTG274CGTTCCCAGGAGTTGATGATGGAGCTCCACCATTTGCAGCAGCAGATGTT
UCRVU08_CCNS15122_g1 Cowpea IT97K-461-4 Mixed Tissue and Conditions cDNA Library UCRVU08-1-2 Vigna unguiculata cDNA clone CCNS15122.g1, mRNA sequence.
FG897887.1:259-278
CAACAGAAAATGGGATGCGTGCTGATGCTG259CGTTCCCAGGAGTTGATGATGGAGCTCCACCATTTGCAGCAGCAGATGTT
UCRVU08_CCNS15374_g1 Cowpea IT97K-461-4 Mixed Tissue and Conditions cDNA Library UCRVU08-1-2 Vigna unguiculata cDNA clone CCNS15374.g1, mRNA sequence.
FG898392.1:259-278
CAACAGAAAATGGGATGCGTGCTGATGCTG259CGTTCCCAGGAGTTGATGATGGAGCTCCACCATTTGCAGCAGCAGATGTT
UCRVU08_CCNS15944_g1 Cowpea IT97K-461-4 Mixed Tissue and Conditions cDNA Library UCRVU08-1-2 Vigna unguiculata cDNA clone CCNS15944.g1, mRNA sequence.
FG899506.1:197-216
CAACAGAAAATGGGATGCGTGCTGATGCTG197CGTTCCCAGGAGTTGATGATGGAGCTCCACCATTTGCAGCAGCAGATGTT
UCRVU08_CCNS4972_g1 Cowpea IT97K-461-4 Mixed Tissue and Conditions cDNA Library UCRVU08-1-2 Vigna unguiculata cDNA clone CCNS4972.g1, mRNA sequence.
FG907142.1:274-293
CAACAGAAAATGGGATGCGTGCTGATGCTG274CGTTCCCAGGAGTTGATGATGGAGCTCCACCATTTGCAGCAGCAGATGTT
UCRVU09_CCNT3556_g1 Cowpea UCR 707 Mixed Tissue and Conditions cDNA Library UCRVU09-1-2 Vigna unguiculata cDNA clone CCNT3556.g1, mRNA sequence.
FG919510.1:261-280
CAACAGAAATTGGGATGCGTGCTGATGCTG261CGTTCCCAGGAGTTGATGATGGAGCTCCACCATTTGCAGCAGCAGATGTT
UCRVU09_CCNT9035_g1 Cowpea UCR 707 Mixed Tissue and Conditions cDNA Library UCRVU09-1-2 Vigna unguiculata cDNA clone CCNT9035.g1, mRNA sequence.
FG928763.1:197-216
CAACAGAAATTGGGATGCGTGCTGATGCTG197CGTTCCCAGGAGTTGATGATGGAGCTCCACCATTTGCAGCAGCAGATGTT
UCRVU09_CCNT11728_g1 Cowpea UCR 707 Mixed Tissue and Conditions cDNA Library UCRVU09-1-2 Vigna unguiculata cDNA clone CCNT11728.g1, mRNA sequence.
FG932135.1:259-278
CAACAGAAATTGGGATGCGTGCTGATGCTG259CGTTCCCAGGAGTTGATGATGGAGCTCCACCATTTGCAGCAGCAGATGTT
UCRVU09_CCNT11759_g1 Cowpea UCR 707 Mixed Tissue and Conditions cDNA Library UCRVU09-1-2 Vigna unguiculata cDNA clone CCNT11759.g1, mRNA sequence.
FG932192.1:259-278
CAACAGAAATTGGGATGCGTGCTGATGCTG259CGTTCCCAGGAGTTGATGATGGAGCTCCACCATTTGCAGCAGCAGATGTT
PVUSE1NG-UP-004_M20_18JULY2008_068 PVUSE1NG Phaseolus vulgaris cDNA, mRNA sequence.
GW891615.1:254-273
AAATAATAAAGGATCCAGGAGTTGAGGCTG254CGTTCCCAGGAGTTGATGATGGAACTACACCTGGAGATCCATTTGCACCA
PVUSE4NG_UP_002_G17_21JUL2008_073 PVUSE4NG Phaseolus vulgaris cDNA, mRNA sequence.
GW913392.1:161-180
AAATAATAAAGGATCCAGGAGTTGAGGCTG161CGTTCCCAGGAGTTGATGATGGAACTACACCTGGAGATCCATTTGCACCA
PVUSE4NG_UP_002_M24_21JUL2008_084 PVUSE4NG Phaseolus vulgaris cDNA, mRNA sequence.
GW913503.1:223-242
AAATAATAAAGGATCCAGGAGTTGAGGCTG223CGTTCCCAGGAGTTGATGATGGAACTACACCTGGAGATCCATTTGCACCA
PVUSE4NG_UP_003_B10_21JUL2008_047 PVUSE4NG Phaseolus vulgaris cDNA, mRNA sequence.
GW913577.1:220-239
AAATAATAAAGGATCCAGGAGTTGAGGCTG220CGTTCCCAGGAGTTGATGATGGAACTACACCTGGAGATCCATTTGCACCA
PVUSE4NG_UP_004_K01_21JUL2008_005 PVUSE4NG Phaseolus vulgaris cDNA, mRNA sequence.
GW914003.1:242-261
AAATAATAAAGGATCCAGGAGTTGAGGCTG242CGTTCCCAGGAGTTGATGATGGAACTACACCTGGAGATCCATTTGCACCA
Vigna angularis mRNA, clone: VES06M22.
HX944649.1:276-295
CAGCAGAAATAGGGCCGCCTGCTGATGCTG276CGTTCCCAGGAGTTGATGATGGAGCTCCACCTGGAGACCCATTTGCTGCA
Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
AP015038.1:1181054-1181073
CAGCAGAAATAGGGCCGCCTGCTGATGCTG1181054CGTTCCCAGGAGTTGATGATGGAGCTCCACCTGGAGACCCATTTGCTGCA
Vigna unguiculata cultivar Xiabao 2 chromosome Vu06.
CP039345.1:1424548-1424567
CAACAGAAATTGGGATGCGTGCTGATGCTG1424548CGTTCCCAGGAGTTGATGATGGAGCTCCACCATTTGCAGCAGCAGATGTT
Vigna unguiculata cultivar Xiabao 2 chromosome Vu06.
CP039345.1:1425757-1425776
CAACAGAAATTGGGATGCGTGCTGATGCTG1425757CGTTCCCAGGAGTTGATGATGGAGCTCCACCATTTGCAGCAGCAGATGTT
PvEST0027 Bean pod tissue cDNA Entry Library Phaseolus vulgaris cDNA clone BE-65 5' similar to putative lipid transfer protein, mRNA sequence.
EE743311.1:495-514
TGGTGCAAATGGATCTCCAGGTGTAGTTCC495ATCATCAACTCCTGGGAACGCAGCCTCAACTCCTGGATCCTTTATTATTT
MOOBK38TRB MOO Vigna unguiculata cDNA, mRNA sequence.
FF386491.1:410-429
AACATCTGCTGCTGCAAATGGTGGAGCTCC410ATCATCAACTCCTGGGAACGCAGCATCAGCACGCATCCCAATTTCTGTTG
MOOBK84TRB MOO Vigna unguiculata cDNA, mRNA sequence.
FF386536.1:315-334
GCGACTCTTTCAAGAATAGCGCTCAGCTCC315ATCATCAACTCCTGGGAACGCAGCATCAGCACGCATCCCAATTTCTGTTG
MOOBK38TF MOO Vigna unguiculata cDNA 5', mRNA sequence.
FF387182.1:410-429
AACATCTGCTGCTGCAAATGGTGGAGCTCC410ATCATCAACTCCTGGGAACGCAGCATCAGCACGCATCCCAATTTCTGTTG
MOOBK84TF MOO Vigna unguiculata cDNA 5', mRNA sequence.
FF387225.1:315-334
GCGACTCTTTCAAGAATAGCGCTCAGCTCC315ATCATCAACTCCTGGGAACGCAGCATCAGCACGCATCCCAATTTCTGTTG
MOOFC09TR MOO Vigna unguiculata cDNA 3', mRNA sequence.
FF395971.1:489-508
AACATCTGCTGCTGCAAATGGTGGAGCTCC489ATCATCAACTCCTGGGAACGCAGCATCAGCACGCATCCCAATTT
UCRVU04_CCNI4053_b1 Cowpea 524B Mixed Tissue and Conditions cDNA Library UCRVU04-1-2 Vigna unguiculata cDNA clone CCNI4053.b1, mRNA sequence.
FG817286.1:428-447
AACATCTGCTGCTGCAAATGGTGGAGCTCC428ATCATCAACTCCTGGGAACGCAGCATCAGCACGCATCCCAATTTCTGTTG
UCRVU04_CCNI6364_b1 Cowpea 524B Mixed Tissue and Conditions cDNA Library UCRVU04-1-2 Vigna unguiculata cDNA clone CCNI6364.b1, mRNA sequence.
FG821199.1:469-488
AACATCTGCTGCTGCAAATGGTGGAGCTCC469ATCATCAACTCCTGGGAACGCAGCATCAGCACGCATCCCAATTTCTGTTG
UCRVU04_CCNI12764_b1 Cowpea 524B Mixed Tissue and Conditions cDNA Library UCRVU04-1-2 Vigna unguiculata cDNA clone CCNI12764.b1, mRNA sequence.
FG827977.1:476-495
AACATCTGCTGCTGCAAATGGTGGAGCTCC476ATCATCAACTCCTGGGAACGCAGCATCAGCACGCATCCCAATTTCTGTTG
UCRVU04_CCNI13519_b1 Cowpea 524B Mixed Tissue and Conditions cDNA Library UCRVU04-1-2 Vigna unguiculata cDNA clone CCNI13519.b1, mRNA sequence.
FG829287.1:471-490
AACATCTGCTGCTGCAAATGGTGGAGCTCC471ATCATCAACTCCTGGGAACGCAGCATCAGCACGCATCCCAATTTCTGTTG
UCRVU05_CCNN5057_b1 Cowpea IT84S-2049 Mixed Tissue and Conditions cDNA Library UCRVU05-2-2 Vigna unguiculata cDNA clone CCNN5057.b1, mRNA sequence.
FG842243.1:467-486
AACATCTGCTGCTGCAAATGGTGGAGCTCC467ATCATCAACTCCTGGGAACGCAGCATCAGCACGCATCCCATTTTCTGTTG
UCRVU05_CCNN6891_b1 Cowpea IT84S-2049 Mixed Tissue and Conditions cDNA Library UCRVU05-2-2 Vigna unguiculata cDNA clone CCNN6891.b1, mRNA sequence.
FG845380.1:469-488
AACATCTGCTGCTGCAAATGGTGGAGCTCC469ATCATCAACTCCTGGGAACGCAGCATCAGCACGCATCCCATTTTCTGTTG
UCRVU05_CCNN19348_b1 Cowpea IT84S-2049 Mixed Tissue and Conditions cDNA Library UCRVU05-2-2 Vigna unguiculata cDNA clone CCNN19348.b1, mRNA sequence.
FG854764.1:469-488
AACATCTGCTGCTGCAAATGGTGGAGCTCC469ATCATCAACTCCTGGGAACGCAGCATCAGCACGCATCCCATTTTCTGTTG
UCRVU07_CCNP1537_g1 Cowpea UCR 779 Mixed Tissue and Conditions cDNA Library UCRVU07-1-2 Vigna unguiculata cDNA clone CCNP1537.g1, mRNA sequence.
FG862790.1:365-384
AACATCTGCTGCTGCAAATGGTGGAGCTCC365ATCATCAACTCCTGGGAACGCAGCATCAGCACGCATCCCATTTTCTGTTG
UCRVU07_CCNP5060_b1 Cowpea UCR 779 Mixed Tissue and Conditions cDNA Library UCRVU07-1-2 Vigna unguiculata cDNA clone CCNP5060.b1, mRNA sequence.
FG868157.1:472-491
AACATCTGCTGCTGCAAATGGTGGAGCTCC472ATCATCAACTCCTGGGAACGCAGCATCAGCACGCATCCCATTTTCTGTTG
UCRVU08_CCNS1200_b1 Cowpea IT97K-461-4 Mixed Tissue and Conditions cDNA Library UCRVU08-1-2 Vigna unguiculata cDNA clone CCNS1200.b1, mRNA sequence.
FG891909.1:470-489
AACATCTGCTGCTGCAAATGGTGGAGCTCC470ATCATCAACTCCTGGGAACGCAGCATCAGCACGCATCCCATTTTCTGTTG
UCRVU08_CCNS15122_b1 Cowpea IT97K-461-4 Mixed Tissue and Conditions cDNA Library UCRVU08-1-2 Vigna unguiculata cDNA clone CCNS15122.b1, mRNA sequence.
FG897886.1:480-499
AACATCTGCTGCTGCAAATGGTGGAGCTCC480ATCATCAACTCCTGGGAACGCAGCATCAGCACGCATCCCATTTTCTGTTG
UCRVU08_CCNS15374_b1 Cowpea IT97K-461-4 Mixed Tissue and Conditions cDNA Library UCRVU08-1-2 Vigna unguiculata cDNA clone CCNS15374.b1, mRNA sequence.
FG898391.1:457-476
AACATCTGCTGCTGCAAATGGTGGAGCTCC457ATCATCAACTCCTGGGAACGCAGCATCAGCACGCATCCCATTTTCTGTTG
UCRVU08_CCNS15944_b1 Cowpea IT97K-461-4 Mixed Tissue and Conditions cDNA Library UCRVU08-1-2 Vigna unguiculata cDNA clone CCNS15944.b1, mRNA sequence.
FG899505.1:504-523
AACATCTGCTGCTGCAAATGGTGGAGCTCC504ATCATCAACTCCTGGGAACGCAGCATCAGCACGCATCCCATTTTCTGTTG
UCRVU08_CCNS4972_b1 Cowpea IT97K-461-4 Mixed Tissue and Conditions cDNA Library UCRVU08-1-2 Vigna unguiculata cDNA clone CCNS4972.b1, mRNA sequence.
FG907141.1:459-478
AACATCTGCTGCTGCAAATGGTGGAGCTCC459ATCATCAACTCCTGGGAACGCAGCATCAGCACGCATCCCATTTTCTGTTG
UCRVU09_CCNT3556_b1 Cowpea UCR 707 Mixed Tissue and Conditions cDNA Library UCRVU09-1-2 Vigna unguiculata cDNA clone CCNT3556.b1, mRNA sequence.
FG919509.1:469-488
AACATCTGCTGCTGCAAATGGTGGAGCTCC469ATCATCAACTCCTGGGAACGCAGCATCAGCACGCATCCCAATTTCTGTTG
UCRVU09_CCNT9035_b1 Cowpea UCR 707 Mixed Tissue and Conditions cDNA Library UCRVU09-1-2 Vigna unguiculata cDNA clone CCNT9035.b1, mRNA sequence.
FG928762.1:395-414
AACATCTGCTGCTGCAAATGGTGGAGCTCC395ATCATCAACTCCTGGGAACGCAGCATCAGCACGCATCCCAATTTCTGTTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CGTTCCCAGGAGTTGATGAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CGTTCCCAGGAGTTGATGAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.858 | 1.849 | search_plus_done; http://172.18.8.135:50400/match?q=CGTTCCCAGGAGTTGATGAT&k=0&no_gap=0&offset=0&limit=50
3.188 | 1.330 | search_minus_done; http://172.18.8.135:50400/match?q=ATCATCAACTCCTGGGAACG&k=0&no_gap=0&offset=0&limit=22
3.203 | 0.015 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).