GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 03:07:03, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Pisum sativum Ps_contig_mira-ass_82691 mRNA sequence.
JI964254.1:94-115
CACTCTCTCATTATTTCTCATCAAAATTTT94CGTTTTGGTTACGATCGAGCTATATCTATCTTAATTCTCATATAAATATTCA
K6 Whero seedling lambda ZapII cDNA library Pisum sativum cDNA clone K6, mRNA sequence.
AA430942.1:719-740
TGAATATTTATATGAGAATTAAGATAGATA719TAGCTCGATCGTAACCAAAACGAAATTTTTGATGAGAAATAATGAGAGAGTG
TSA: Lens culinaris contig03482.Lecu mRNA sequence.
JI849753.1:546-567
ATGGAATATTTATATGAGAATTAAGATAGA546TAGCTCGATCGTAACCAAAACGAAATTTTTGATGAGAAATAATGAGAGAGTA
TSA: Pisum sativum Ps_contig_mira-ass_982 mRNA sequence.
JI897831.1:949-970
TGAATATTTATATGAGAATTAAGATAGATA949TAGCTCGATCGTAACCAAAACGAAAATTTTGATGAGAAATAATGAGAGAGTG
TSA: Pisum sativum Ps_contig_mira-ass_16640 mRNA sequence.
JI913088.1:309-330
TGAATATTTATATGAGAATTAAGATAGATA309TAGCTCGATCGTAACCAAAACGAAATTTTTGATGAGAAATAATGAGAGAGTG
TSA: Pisum sativum contig01804.PisaPYK9 mRNA sequence.
JR952516.1:887-908
TGAATATTTATATGAGAATTAAGATAGATA887TAGCTCGATCGTAACCAAAACGAAATTTTTGATGAGAAATAATGAGAGAGTG
Lathyrus sativus genome assembly, chromosome: 4.
OZ012738.1:642361642-642361663
GGAATATTTATATGAGAATTAAGATAGATA642361642TAGCTCGATCGTAACCAAAACGAAATTTTTGATGAGAAATAATGAGAGAGTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CGTTTTGGTTACGATCGAGCTA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CGTTTTGGTTACGATCGAGCTA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.103 | 0.094 | search_plus_done; http://172.18.8.135:50400/match?q=CGTTTTGGTTACGATCGAGCTA&k=0&no_gap=0&offset=0&limit=50
0.148 | 0.044 | search_minus_done; http://172.18.8.135:50400/match?q=TAGCTCGATCGTAACCAAAACG&k=0&no_gap=0&offset=0&limit=49
0.152 | 0.004 | cgi_end;

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