GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-17 19:36:29, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

021210ABNB999052HT (ABNB) Braeburn cultured fruit cells, boron exposed, phytoremediation Malus domestica cDNA clone ABNB999052, mRNA sequence.
CN914264.1:164-183
GAAGATGGAGAAAAGATTAGAGCTTTTGGT164CGTTTTGGTTACTGGGGCAATTTTCTTGCATGTCACTGCCGACCCAGTTG
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141927.1:31807178-31807197
GAAGATGGAGAAAAGATTAGAGCTTTTGGT31807178CGTTTTGGTTACTGGGGCAATTTTCTTGCATGTCACTGCCGACCCAGTTG
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141953.1:30101066-30101085
GAAGATGGAGAAAAGATTAGAGCTTTTGGT30101066CGTTTTGGTTACTGGGGCAATTTTCTTGCATGTCACTGCCGACCCAGTTG
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141970.1:31868560-31868579
GAAGATGGAGAAAAGATTAGAGCTTTTGGT31868560CGTTTTGGTTACTGGGGCAATTTTCTTGCATGTCACTGCCGACCCAGTTG
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143358.1:31438051-31438070
GAAGATGGAGAAAAGATTAGAGCTTTTGGT31438051CGTTTTGGTTACTGGGGCAATTTTCTTGCATGTCACTGCCGACCCAGTTG
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143375.1:29890354-29890373
GAAGATGGAGAAAAGATTAGAGCTTTTGGT29890354CGTTTTGGTTACTGGGGCAATTTTCTTGCATGTCACTGCCGACCCAGTTG
Malus sylvestris genome assembly, chromosome: 1.
OU696503.1:28311230-28311249
GAAGATGGAGAAAAGATTAGAGCTTTTGGT28311230CGTTTTGGTTACTGGGGCAATTTTCTTGCATGTCACTGCCGACCCAGTTG
Malus domestica genome assembly, chromosome: 1.
OU696677.1:28262144-28262163
GAAGATGGAGAAAAGATTAGAGCTTTTGGT28262144CGTTTTGGTTACTGGGGCAATTTTCTTGCATGTCACTGCCGACCCAGTTG
Malus domestica genome assembly, chromosome: 1.
OU744542.1:32032204-32032223
GAAGATGGAGAAAAGATTAGAGCTTTTGGT32032204CGTTTTGGTTACTGGGGCAATTTTCTTGCATGTCACTGCCGACCCAGTTG
Malus domestica genome assembly, chromosome: 1.
OU744953.1:31628602-31628621
GAAGATGGAGAAAAGATTAGAGCTTTTGGT31628602CGTTTTGGTTACTGGGGCAATTTTCTTGCATGTCACTGCCGACCCAGTTG
Malus domestica genome assembly, chromosome: 1.
OU744991.1:28504647-28504666
GAAGATGGAGAAAAGATTAGAGCTTTTGGT28504647CGTTTTGGTTACTGGGGCAATTTTCTTGCATGTCACTGCCGACCCAGTTG
Malus x robusta genome assembly, chromosome: 12.
OY720336.1:1881922-1881941
CAACTGGGTCGGCAGTGACATGCAAGAAAA1881922TTGCCCCAGTAACCAAAACGACCAAAAGCTCTAATCTTTTCTCCATCTTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CGTTTTGGTTACTGGGGCAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CGTTTTGGTTACTGGGGCAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.151 | 0.142 | search_plus_done; http://172.18.8.135:50400/match?q=CGTTTTGGTTACTGGGGCAA&k=0&no_gap=0&offset=0&limit=50
0.174 | 0.023 | search_minus_done; http://172.18.8.135:50400/match?q=TTGCCCCAGTAACCAAAACG&k=0&no_gap=0&offset=0&limit=39
0.175 | 0.001 | cgi_end;

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