GGGenome | Results

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2025-04-10 21:05:03, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

TSA: Pyrus x bretschneideri Unigene25938_XinShao mRNA sequence.
JR619480.1:390-409

CGTCAAAACATTCAGAGCCGCGCCCTTCTG390CTACCCTCAGCTGAACCCAATCTGTCAAATCAACCCCATTTCCTTCACCT

Geranium rotundifolium genome assembly, chromosome: 9.
OY987319.1:3588523-3588542

TTTAATCATCTACAGACTTTGCACTACATT3588523CTACCCTCAGCTGAACCCAACCCAACTGCTCAGTTGGTCAAGGTGATTAA

TSA: Pyrus communis mRNA, contig: lc31862.
FX639931.1:227-246

AGGTGAAGGAAATGGGGTTGATTTGACAGA227TTGGGTTCAGCTGAGGGTAGCAGAAGGGCGCGGCTCTGAATGTTTTGACG

Pyrus communis genome assembly, chromosome: 2.
OY757069.1:5765309-5765328

AGGTGAAGGAAATGGGGTTGATTTGACAGA5765309TTGGGTTCAGCTGAGGGTAGCAGAAGGGCGCGGCTCTGAATGTTTTGACG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.120 | 0.112 | search_plus_done; http://172.18.8.135:50400/match?q=CTACCCTCAGCTGAACCCAA&k=0&no_gap=0&offset=0&limit=50
0.149 | 0.028 | search_minus_done; http://172.18.8.135:50400/match?q=TTGGGTTCAGCTGAGGGTAG&k=0&no_gap=0&offset=0&limit=48
0.150 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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