GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-18 12:35:01, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH007_00993m, 5' end sequence.
AB450695.1:160-182
TTCTTCACTTGGTGCCATCATCCCTTCCCA160CTACGCCACTTAATCTCCTCCCTTATATATACTAATCCTACAAAATCCCAAAT
Pyrus pyrifolia mRNA, clone: NFR1_17_42, 5' end sequence, expressed in fruit.
HX747031.1:84-106
TTCTTCACTTGGTGCCATCATCCCTTCCCA84CTACGCCACTTAATCTCCTCCCTTATATATACTAATCCTACAAAATCCCAAAT
Pyrus pyrifolia mRNA, clone: NFR4_08_23, 5' end sequence, expressed in fruit.
HX754338.1:22-44
GGGTGCCATCATCCCTTCCCA22CTACGCCACTTAATCTCCTCCCTTATATATACTAATCCTACAAAATCCCAAAT
Pyrus pyrifolia mRNA, clone: NFR4_08_24, 5' end sequence, expressed in fruit.
HX754339.1:22-44
GGGTGCCATCATCCCTTCCCA22CTACGCCACTTAATCTCCTCCCTTATATATACTAATCCTACAAAATCCCAAAT
TSA: Pyrus pyrifolia mRNA, contig: contig_3173.
FX396278.1:84-106
TTCTTCACTTGGTGCCATCATCCCTTCCCA84CTACGCCACTTAATCTCCTCCCTTATATATACTAATCCTACAAAATCCCAAAT
TSA: Pyrus x bretschneideri Unigene49891_XinShao mRNA sequence.
JR639863.1:249-271
ATTTGGGATTTTGTAGGATTAGTATATATA249AGGGAGGAGATTAAGTGGCGTAGTGGGAAGGGATGATGGCACCAAGTGAAGAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTACGCCACTTAATCTCCTCCCT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTACGCCACTTAATCTCCTCCCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.421 | 0.411 | search_plus_done; http://172.18.8.135:50400/match?q=CTACGCCACTTAATCTCCTCCCT&k=0&no_gap=0&offset=0&limit=50
0.452 | 0.032 | search_minus_done; http://172.18.8.135:50400/match?q=AGGGAGGAGATTAAGTGGCGTAG&k=0&no_gap=0&offset=0&limit=45
0.453 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).