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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-13 08:32:40, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Mouse DNA sequence from clone RP23-134I15 on chromosome 2.
AL805950.11:221122-221140
CTGTCAGTTCCTGCCAAGTATTGATTCCGT221122CTAGGTGAAGGTGAAAGGGTTCTCTTGTCTCTAATCCAGACATCTGAAA
Mus musculus genome assembly, chromosome: 2.
OW971562.1:124933841-124933859
CTGTCAGTTCCTGCCAAGTATTGATTCCGT124933841CTAGGTGAAGGTGAAAGGGTTCTCTTGTCTCTAATCCAGACATCTGAAA
Mus musculus genome assembly, chromosome: 2.
OW971574.1:125281562-125281580
CTGTCAGTTCCTGCCAAGTATTGATTGCGT125281562CTAGGTGAAGGTGAAAGGGTTCTCTTGTCTCTAATCCAGACATCTGAAA
Mus musculus genome assembly, chromosome: 2.
OW971595.1:124852222-124852240
CTGTCAGTTCCTGCCAAGTATTGATTCCGT124852222CTAGGTGAAGGTGAAAGGGTTCTCTTGTCTCTAATCCAGACATCTGAAA
Mus musculus domesticus genome assembly, chromosome: 2.
OW971624.1:124863067-124863085
CTGTCAGTTCCTGCCAAGTATTGATTCCGT124863067CTAGGTGAAGGTGAAAGGGTTCTCTTGTCTCTAATCCAGACATCTGAAA
Mus musculus genome assembly, chromosome: 2.
OW971637.1:124880120-124880138
CTGTCAGTTCCTGCCAAGTATTGATTCCGT124880120CTAGGTGAAGGTGAAAGGGTTCTCTTGTCTCTAATCCAGACATCTGAAA
Mus musculus molossinus genome assembly, chromosome: 2.
OW971659.1:124786892-124786910
CTGTCAGTTCCTGCCAAGTATTGATTGCGT124786892CTAGGTGAAGGTGAAAGGGTTCTCTTGTCTCTAATCCAGACATCTGAAA
Mus spretus genome assembly, chromosome: 2.
OW971679.1:127102769-127102787
CTGTCAGTTCCTGCCAAGTATTGATCCCGT127102769CTAGGTGAAGGTGAAAGGGTTCTCTTGTCTCTAATCCAGACATCTGAAA
Mus musculus genome assembly, chromosome: 2.
OW971710.1:124106756-124106774
CTGTCAGTTCCTGCCAAGTATTGATTCCGT124106756CTAGGTGAAGGTGAAAGGGTTCTCTTGTCTCTAATCCAGACATCTGAAA
Mus musculus genome assembly, chromosome: 2.
OW971721.1:125058437-125058455
CTGTCAGTTCCTGCCAAGTATTGATTCCGT125058437CTAGGTGAAGGTGAAAGGGTTCTCTTGTCTCTAATCCAGACATCTGAAA
Mus musculus genome assembly, chromosome: 2.
OW971742.1:125085605-125085623
CTGTCAGTTCCTGCCAAGTATTGATTCCGT125085605CTAGGTGAAGGTGAAAGGGTTCTCTTGTCTCTAATCCAGACATCTGAAA
Mus musculus musculus genome assembly, chromosome: 2.
OW971763.1:124680237-124680255
CTGTCAGTTCCTGCCAAGTATTGATTGCGT124680237CTAGGTGAAGGTGAAAGGGTTCTCTTGTCTCTAATCCAGACATCTGAAA
Mus musculus genome assembly, chromosome: 2.
OW971784.1:125051647-125051665
CTGTCAGTTCCTGCCAAGTATTGATTCCGT125051647CTAGGTGAAGGTGAAAGGGTTCTCTTGTCTCTAATCCAGACATCTGAAA
Mus musculus genome assembly, chromosome: 2.
OW971805.1:124935705-124935723
CTGTCAGTTCCTGCCAAGTATTGATTGCGT124935705CTAGGTGAAGGTGAAAGGGTTCTCTTGTCTCTAATCCAGACATCTGAAA
Mus musculus castaneus genome assembly, chromosome: 2.
OW971836.1:124219710-124219728
CTGTCAGTTCCTGCCAAGTATTGATTCCGT124219710CTAGGTGAAGGTGAAAGGGTTCTCTTGTCTCTAATCCAGACATCTGAAA
Mus musculus genome assembly, chromosome: 2.
OW971855.1:125431144-125431162
CTGTCAGTTCCTGCCAAGTATTGATTGCGT125431144CTAGGTGAAGGTGAAAGGGTTCTCTTGTCTCTAATCCAGACATCTGAAA
Heterocephalus glaber genome assembly, chromosome: 10.
OX090950.1:17321460-17321478
CCTGAACTTTTTAAATGAAATCTTTGTTTC17321460CTAGGTGAAGGTGAAAGGGAAATGTTTCATGGGGTCCTTCTTGGAAATT
Mus musculus genome assembly, chromosome: 2.
OX389796.1:134600020-134600038
CTGTCAGTTCCTGCCAAGTATTGATTGCGT134600020CTAGGTGAAGGTGAAAGGGTTCTCTTGTCTCTAATCCAGACATCTGAAA
Mus musculus genome assembly, chromosome: 2.
OX390146.1:126693805-126693823
CTGTCAGTTCCTGCCAAGTATTGATTCCGT126693805CTAGGTGAAGGTGAAAGGGTTCTCTTGTCTCTAATCCAGACATCTGAAA
Mus musculus genome assembly, chromosome: 2.
OX439015.1:131896221-131896239
CTGTCAGTTCCTGCCAAGTATTGATTCCGT131896221CTAGGTGAAGGTGAAAGGGTTCTCTTGTCTCTAATCCAGACATCTGAAA
Cloning vector pTLD67, complete sequence.
MG711909.1:65801-65819
CTGTCAGTTCCTGCCAAGTATTGATTCCGT65801CTAGGTGAAGGTGAAAGGGTTCTCTTGTCTCTAATCCAGACATCTGAAA
Cloning vector pTLD39, complete sequence.
MG711910.1:69192-69210
CTGTCAGTTCCTGCCAAGTATTGATTCCGT69192CTAGGTGAAGGTGAAAGGGTTCTCTTGTCTCTAATCCAGACATCTGAAA
Medicago truncatula EST MtBA29A05R1 : T7 end of clone MtBA29A05 of cDNA library MtBA from root tips of cultivar Jemalong of Medicago truncatula (barrel medic).
AL369119.1:334-352
TGAGAAGGTGAATCTTGTGAATTGCAGAAT334CTAGGTGAAGGTGAAAGGGATCTAAGTACAGTGTTAGTTCTTGATTTTC
mfcor3A3 Medicago falcata SSH Library of cold-responsive cDNA Medicago falcata cDNA, mRNA sequence.
EL610108.1:214-232
TGAGAAGGTGAATCTTGTGAATTGCAGAAT214CTAGGTGAAGGTGAAAGGGATCTAAGT
725 Alfalfa SSH cDNA library induced by salt stress Medicago sativa cDNA, mRNA sequence.
FE896893.1:214-232
TGAGAAGGTGAATCTTGTGAATTGCAGAAT214CTAGGTGAAGGTGAAAGGGATCTAAGT
TSA: Medicago sativa cultivar Chilean F0D_940 mRNA sequence.
JL867395.1:880-898
TGAGAAGGTGAATCTTGTGAATTGCAGAAT880CTAGGTGAAGGTGAAAGGGATCTAAGTACAGTGTTGGTTCTTGATTTTC
TSA: Medicago sativa subsp. falcata cultivar Wisfal FZ0_8894 mRNA sequence.
JL890073.1:914-932
TGAGAAGGTGAATCTTGTGAATTGCAGAAT914CTAGGTGAAGGTGAAAGGGATCTAAGTACAGTGTTGGTTCTTGATTTTC
MBEHV47TR mth2 Medicago truncatula genomic clone 59G22, genomic survey sequence.
CG937952.1:73-91
TGAGAAGGTGAATCTTGTGAATTGCAGAAT73CTAGGTGAAGGTGAAAGGGATCTAAGTACAGTGTTAGTTCTTGATTTTC
mte1-14P18FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula.
CR297790.1:414-432
TGAGAAGGTGAATCTTGTGAATTGCAGAAT414CTAGGTGAAGGTGAAAGGGATCTAAGTACAGTGTTAGTTCTTGATTTTC
Mouse DNA sequence *** SEQUENCING CANCELLED *** from clone RP23-134D18.
BX679658.3:422028-422046
CTGTCAGTTCCTGCCAAGTATTGATTCCGT422028CTAGGTGAAGGTGAAAGGGTTCTCTTGTCTCTAATCCAGACATCTGAAA
Medicago truncatula clone MTYF1_F2_F3_F41G-L-21 unknown mRNA.
BT051496.1:814-832
TGAGAAGGTGAATCTTGTGAATTGCAGAAT814CTAGGTGAAGGTGAAAGGGATCTAAGTACAGTGTTAGTTCTTGATTTTC
Trifolium repens isolate ACLI19 chromosome 08_0cc.
CP125850.1:56865614-56865632
GATTGATGTTGTTGTTGTGAATTGGAGAAT56865614CTAGGTGAAGGTGAAAGGGATCGAAGTACAGTGGTTCTTGATTTTCTAG
Trifolium repens isolate ACLI19 chromosome 08_Pall.
CP125851.1:49191310-49191328
GAAGATTGTTGTTGTTGTGAATTGGAGAAT49191310CTAGGTGAAGGTGAAAGGGATCGAAGTACAGTGGTTCTTGATTTTCTAG
Medicago arabica genome assembly, chromosome: 5.
OX326968.1:53873583-53873601
TGAGAAGGTGAATCTTGTGAATTGCAGAAT53873583CTAGGTGAAGGTGAAAGGGATCTAAGTACAGTGTTAGTTCTTGATTTTC
Trifolium fragiferum genome assembly, chromosome: 4.
OX940792.1:54737528-54737546
GATTGTTGTTGATGTTGTGAATTGGAGAAT54737528CTAGGTGAAGGTGAAAGGGATCGAAGTACAGTGGTTCTTGATTTTCTAG
Erodium maritimum genome assembly, chromosome: 5.
OY997592.1:63811154-63811172
ACCAACTCGTTGATCCCTTGCAAGGGATTT63811154CTAGGTGAAGGTGAAAGGGATGCTAGGTCGCAAAGGAAGTATCTGGGAA
Cryptocephalus primarius genome assembly, chromosome: 12.
OY754948.1:1780576-1780594
TAGGAGAAAAGGTAGAATAATAATATTTTA1780576CTAGGTGAAGGTGAAAGGGTGAAGTTAGCAGCTATTGTGAAGTTAGCAG
Heterocephalus glaber genome assembly, chromosome: 10.
OX090918.1:41036101-41036119
AATTTCCAAGAAGGACCCCATGAAACATTT41036101CCCTTTCACCTTCACCTAGGAAACAAAGATTTCATTTAAAAAGTTCAGG
Heterocephalus glaber genome assembly, chromosome: 12.
OZ001077.1:79065645-79065663
AATTTCCAAGAAGGACCCCATGAAACATTT79065645CCCTTTCACCTTCACCTAGGAAACAAAGATTTCATTTAAAAAGTTCAGG
Heterocephalus glaber genome assembly, chromosome: 12.
OZ001120.1:78527585-78527603
AATTTCCAAGAAGGACCCCATGAAACATTT78527585CCCTTTCACCTTCACCTAGGAAACAAAGATTTCATTTAAAAAGTTCAGG
Medicago truncatula EST MtBA14E11F1 : T3 end of clone MtBA14E11 of cDNA library MtBA from root tips of cultivar Jemalong of Medicago truncatula (barrel medic).
AL367374.1:98-116
GAAAATCAAGAACTAACACTGTACTTAGAT98CCCTTTCACCTTCACCTAGATTCTGCAATTCACAAGATTCACCTTCTCA
NF042G08IN1F1065 Insect herbivory Medicago truncatula cDNA clone NF042G08IN 5', mRNA sequence.
BE321371.2:127-145
GAAAATCAAGAACTAACACTGTACTTAGAT127CCCTTTCACCTTCACCTAGATTCTGCAATTCACAAGATTCACCTTCTCA
EST430856 GVSN Medicago truncatula cDNA clone pGVSN-15A18, mRNA sequence.
BE999133.1:90-108
GAAAATCAAGAACTAACACTGTACTTAGAT90CCCTTTCACCTTCACCTAGATTCTGCAATTCACAAGATTCACCTTCTCA
NF053B07PL1F1059 Phosphate starved leaf Medicago truncatula cDNA clone NF053B07PL 5', mRNA sequence.
BF638503.1:127-145
GAAAATCAAGAACTAACACTGTACTTAGAT127CCCTTTCACCTTCACCTAGATTCTGCAATTCACAAGATTCACCTTCTCA
NF032G01EC1F1006 Elicited cell culture Medicago truncatula cDNA clone NF032G01EC 5', mRNA sequence.
BF645685.1:127-145
GAAAATCAAGAACTAACACTGTACTTAGAT127CCCTTTCACCTTCACCTAGATTCTGCAATTCACAAGATTCACCTTCTCA
NF025G07EC1F1055 Elicited cell culture Medicago truncatula cDNA clone NF025G07EC 5', mRNA sequence.
BF648062.1:104-122
GAAAATCAAGAACTAACACTGTACTTAGAT104CCCTTTCACCTTCACCTAGATTCTGCAATTCACAAGATTCACCTTCTCA
NF109B04EC1F1031 Elicited cell culture Medicago truncatula cDNA clone NF109B04EC 5', mRNA sequence.
BF651000.1:110-128
GAAAATCAAGAACTAACACTGTACTTAGAT110CCCTTTCACCTTCACCTAGATTCTGCAATTCACAAGATTCACCTTCTCA
EST482505 GVN Medicago truncatula cDNA clone pGVN-62E17 5' end, mRNA sequence.
BG580777.1:28-46
AATCAAGAACTAACACTGTACTTAGAT28CCCTTTCACCTTCACCTAGATTCTGCAATTCACAAGATTCACCTTCTCA
EST508210 HOGA Medicago truncatula cDNA clone pHOGA-9A18 5' end, mRNA sequence.
BG646591.1:78-96
AAAATCAAGAAACTAACACTGTACTTAGAT78CCCTTTCACCTTCACCTAGATTCTGCAATTCACAAGATTCACCTTCTCA
EST509289 HOGA Medicago truncatula cDNA clone pHOGA-17H1 5' end, mRNA sequence.
BG647670.1:90-108
GAAAATCAAGAACTAACACTGTACTTAGAT90CCCTTTCACCTTCACCTAGATTCTGCAATTCACAAGATTCACCTTCTCA
EST590150 KV2 Medicago truncatula cDNA clone pKV2-52M22, mRNA sequence.
BM779574.1:28-46
AATCAAGAACTAACACTGTACTTAGAT28CCCTTTCACCTTCACCTAGATTCTGCAATTCACAAGATTCACCTTCTCA
EST592402 BNIR Medicago truncatula/Meloidogyne incognita mixed EST library cDNA clone pBNIR-20H23, mRNA sequence.
BM814309.1:67-85
GAAAATCAAGAACTAACACTGTACTTAGAT67CCCTTTCACCTTCACCTAGATTCTGCAATTCACAAGATTCACCTTCTCA
EST592403 BNIR Medicago truncatula/Meloidogyne incognita mixed EST library cDNA clone pBNIR-20H23, mRNA sequence.
BM814310.1:28-46
AATCAAGAACTAACACTGTACTTAGAT28CCCTTTCACCTTCACCTAGATTCTGCAATTCACAAGATTCACCTTCTCA
TSA: Lens culinaris contig00420.Lecu mRNA sequence.
JI846713.1:118-136
CTAGAAAATCAAGAACCACTGTACTCCGAT118CCCTTTCACCTTCACCTAGATTCTCCAATTCAGAACCATCACCTTCTCA
Mus musculus clone RP24-182A18, WORKING DRAFT SEQUENCE, 15 unordered pieces.
AC104222.5:11664-11682
TTTCAGATGTCTGGATTAGAGACAAGAGAA11664CCCTTTCACCTTCACCTAGACGGAATCAATACTTGGCAGGAACTGACAG
Mouse DNA sequence *** SEQUENCING CANCELLED *** from clone RP23-134D18.
BX679658.3:16200-16218
TTTCAGATGTCTGGATTAGAGACAAGAGAA16200CCCTTTCACCTTCACCTAGACGGAATCAATACTTGGCAGGAACTGACAG
Medicago truncatula chromosome 8 clone mth2-28c12, complete sequence.
AC152347.14:91937-91955
GAAAATCAAGAACTAACACTGTACTTAGAT91937CCCTTTCACCTTCACCTAGATTCTGCAATTCACAAGATTCACCTTCTCA
Medicago truncatula clone MTYF1_F2_F3_F41G-O-5 unknown mRNA.
BT051290.1:137-155
GAAAATCAAGAACTAACACTGTACTTAGAT137CCCTTTCACCTTCACCTAGATTCTGCAATTCACAAGATTCACCTTCTCA
Medicago truncatula clone MTYFP_FQ_FR_FS1G-E-6 unknown mRNA.
BT053494.1:141-159
GAAAATCAAGAACTAACACTGTACTTAGAT141CCCTTTCACCTTCACCTAGATTCTGCAATTCACAAGATTCACCTCCTCA
Medicago truncatula clone JCVI-FLMt-2F5 unknown mRNA.
BT141794.1:142-160
GAAAATCAAGAACTAACACTGTACTTAGAT142CCCTTTCACCTTCACCTAGATTCTGCAATTCACAAGATTCACCTTCTCA
Medicago truncatula clone JCVI-FLMt-19J21 unknown mRNA.
BT145410.1:139-157
GAAAATCAAGAACTAACACTGTACTTAGAT139CCCTTTCACCTTCACCTAGATTCTGCAATTCACAAGATTCACCTTCTCA
Wolffia australiana isolate 7733 chromosome 10.
CP092609.1:15130648-15130666
TCTTAGAATGATAGGTGCTAAACTTAGATC15130648CCCTTTCACCTTCACCTAGTTACAATAAAATCGACGGGGATCTCACAAT
Trifolium subterraneum genome assembly, chromosome: 4.
OX637464.1:7201522-7201540
CTAGAAAATCAAAAACCACTGTACTTCGAT7201522CCCTTTCACCTTCACCTAGATTCTCCAATTCACAACATCAACAACAATC
Medicago lupulina genome assembly, chromosome: 5.
OY283143.1:7830726-7830744
GAAAATCAAGAACCAACCCTGTACTTAGAT7830726CCCTTTCACCTTCACCTAGATTCTGCAATTCACACGATTCATCTTCTCA
Hordeum bulbosum genome assembly, chromosome: 2H_3.
OY737475.1:262570497-262570515
TTTAAATATTGTTGTCGGGTCGCCCGTTTC262570497CCCTTTCACCTTCACCTAGCCACTCTACCCAGCCCACCTAGCCCTACCC
Hordeum bulbosum genome assembly, chromosome: 2H_2.
OY737497.1:261234565-261234583
TTTAAATATTGTTGTCGGGTCGCCCGTTTC261234565CCCTTTCACCTTCACCTAGCCACTCTACCCAGCCCACCTAGCCCTACCC
Hordeum bulbosum genome assembly, chromosome: 2H_3.
OY737881.1:266336422-266336440
TTTAAATATTGTTGTCGGGTCGCCCGTTTC266336422CCCTTTCACCTTCACCTAGCCACTCTACCCAGCCCACCTAGCCCTACCC
Limenitis camilla genome assembly, chromosome: 19.
LR990243.1:7233707-7233725
TAGAGCTTCGCTTCACATGGGGTCCATCAG7233707CCCTTTCACCTTCACCTAGCCTAGCTAGTGGGGTCGTAGGCCTGTATTG
Papilio machaon genome assembly, chromosome: 23.
OU538780.1:3649949-3649967
AATTAAAATGAAATAATTAAAATTGTGTTT3649949CCCTTTCACCTTCACCTAGTTTATATTATTTTAAATAAAAAAATGACAA
Sepia lycidas genome assembly, chromosome: 17.
OZ010587.1:69117882-69117900
AGACGGCTTCGGGGTAGAGCGGCACACTCC69117882CCCTTTCACCTTCACCTAGCTGACCCTCGTTGCTGACCACTGAAGAAGC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTAGGTGAAGGTGAAAGGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTAGGTGAAGGTGAAAGGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.257 | 0.248 | search_plus_done; http://172.18.8.135:50400/match?q=CTAGGTGAAGGTGAAAGGG&k=0&no_gap=0&offset=0&limit=50
0.452 | 0.195 | search_minus_done; http://172.18.8.135:50400/match?q=CCCTTTCACCTTCACCTAG&k=0&no_gap=0&offset=0&limit=13
0.474 | 0.022 | cgi_end;

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