GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-17 21:57:40, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

pOP-EON00555_EST_C_1_pSK_SK EON (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EON00555 similar to catalase, mRNA sequence.
DW248258.1:589-612
TATATATATATGCATGCTTGTGACTTTAAA589CTATGAACTTACCTTGTGTACTTCTCTGATCACTGCACTTG
OPYF03003 Elaeis guineensis young flower 4-6 cm Elaeis guineensis cDNA clone MF351.seq, mRNA sequence.
EL683644.1:150-173
TATATATATATGCATGCTGGTGACTTTAAA150CTATGAACTTACCTTGTGTACTTCTCTGATCACTGCACTTGCTGGGATCTGNAA
OPR02512 Elaeis guineensis root Elaeis guineensis cDNA clone OPVRXX_292.seq, mRNA sequence.
EL692472.1:308-331
TATATATATATGCATGCTTGTGACTTTAAA308CTATGAACTTACCTTGTGTACTTCTCTG
pOP-CNIP00421 CNI (Oil Palm Non-Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CNIP00421, mRNA sequence.
ES324079.1:265-288
TATATATATATGCATGCTTGTGACTTTAAA265CTATGAACTTACCTTGTGTACTTCTCTGATCACTGCACTTGCTGGGATCTGGAA
pOP-CNH04952_EST_C_1_pSK_SK CNH (Oil Palm Non-Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CNH04952 5', mRNA sequence.
EY400471.1:362-385
TATATATATATGCATGCTTGTGACTTTAAA362CTATGAACTTACCTTGTGTACTTCTCTGATCACTGCACTTGCTGGGATCTGGAA
pOP-CNIP00421_EST_C_1_pSK_SK CNI (Oil Palm Non-Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CNIP00421 5', mRNA sequence.
EY403542.1:265-288
TATATATATATGCATGCTTGTGACTTTAAA265CTATGAACTTACCTTGTGTACTTCTCTGATCACTGCACTTGCTGGGATCTGGAA
pOP-CNIP00477_EST_C_1_pSK_SK CNI (Oil Palm Non-Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CNIP00477 5', mRNA sequence.
EY404017.1:217-240
TATATATATATGCATGCTTGTGACTTTAAA217CTATGAACTTACCTTGTGTACTTCTCTGATCACTGCACTTGCTGGGATCTGGAA
Elaeis guineensis clone EGEMS0144 microsatellite sequence.
KJ830494.1:265-288
TATATATATATGCATGCTTGTGACTTTAAA265CTATGAACTTACCTTGTGTACTTCTCTGATCACTGCACTTGCTGGGATCTGGAA
Elaeis guineensis clone EGEMS0190 microsatellite sequence.
KJ830503.1:265-288
TATATATATATGCATGCTTGTGACTTTAAA265CTATGAACTTACCTTGTGTACTTCTCTGATCACTGCACTTGCTGGGATCTGGAA
Elaeis guineensis EST, clone (6lib)_isotig25765.
LM617601.1:132-155
TTCCAGATCCCAGCAAGTGCAGTGATCAGA132GAAGTACACAAGGTAAGTTCATAGTTTAAAGTCACAAGCATGCATATATATATA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTATGAACTTACCTTGTGTACTTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTATGAACTTACCTTGTGTACTTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.562 | 0.553 | search_plus_done; http://172.18.8.135:50400/match?q=CTATGAACTTACCTTGTGTACTTC&k=0&no_gap=0&offset=0&limit=50
0.705 | 0.143 | search_minus_done; http://172.18.8.135:50400/match?q=GAAGTACACAAGGTAAGTTCATAG&k=0&no_gap=0&offset=0&limit=41
0.706 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).