GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-16 03:45:17, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Trifolium repens mRNA, clone: WCC04k02_029, unspecified EST.
FY455579.1:105-124
ATCGACGAGAGCGATCACAGTGCATACGCT105CTCAAATGGACGCTTGATCATTTCTTCAACGCCGGCAACGATTCTGTTTT
Trifolium repens mRNA, clone: WCC13i08_021, unspecified EST.
FY458685.1:318-337
ATCGACGAGAGCGATCACAGTGCTTACGCT318CTCAAATGGACGCTTGATCATTTCTTCAACGCCGGCAACGATTCTGTTTT
Trifolium repens mRNA, clone: WCC13k01_013, unspecified EST.
FY458721.1:118-137
ATCGACGAGAGCGATCACAGTGCTTACGCT118CTCAAATGGACGCTTGATCATTTCTTCAACGCTGGCAACGATTCTGTTTT
Trifolium repens isolate ACLI19 chromosome 01_Occ.
CP125836.1:51812692-51812711
AAAACAGAATCGTTGCCGGCGTTGAAGAAA51812692TGATCAAGCGTCCATTTGAGAGCGTATGCACTGTGATCGCTCTCGTCGAT
Trifolium repens isolate ACLI19 chromosome 01_Pall.
CP125837.1:51205073-51205092
AAAACAGAATCGTTGCCAGCGTTGAAGAAA51205073TGATCAAGCGTCCATTTGAGAGCGTAAGCACTGTGATCGCTCTCGTCGAT
Trifolium dubium genome assembly, chromosome: 3.
OX638064.1:50232922-50232941
TTGAAAACAGAATTGTTAGCGTTGAAGAAA50232922TGATCAAGCGTCCATTTGAGAGCGTAAGCACTGTGGTCGCTCTCGTCGAT
Trifolium dubium genome assembly, chromosome: 13.
OX638074.1:28062033-28062052
TTGAAAACAGAATTGTTAGCGTTGAAGAAA28062033TGATCAAGCGTCCATTTGAGAGCGTAAGCACTGTGCTCGCTCTCGTCGAT
Trifolium fragiferum genome assembly, chromosome: 7.
OX940795.1:43776105-43776124
AAAACAGAATCGTTCCCGGCGGTGAAGAAA43776105TGATCAAGCGTCCATTTGAGAGCGTAAGCACTGTGATCGCTTTCGTCGAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTCAAATGGACGCTTGATCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTCAAATGGACGCTTGATCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.339 | 0.330 | search_plus_done; http://172.18.8.135:50400/match?q=CTCAAATGGACGCTTGATCA&k=0&no_gap=0&offset=0&limit=50
0.357 | 0.019 | search_minus_done; http://172.18.8.135:50400/match?q=TGATCAAGCGTCCATTTGAG&k=0&no_gap=0&offset=0&limit=47
0.361 | 0.003 | cgi_end;

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