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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 06:56:49, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:329252-329271
CCTGAAGGAGGAGGACTACTACCTGATTTA329252CTCAAGGATTTCATGCCCACATTCTCTTCTCTCTCTTCCATCTCTCTCTC
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:397780-397799
CCTGAAGGAGGAGGACTACTACCTGATTTA397780CTCAAGGATTTCATGCCCACATTCTCTTCTCTCTCTTCCATCTCTCTCTC
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141963.1:375735-375754
CCTGAAGGAGGAGGACTACTACCTGATTTA375735CTCAAGGATTTCATGCCCACATTCTCTTCTCTCTCTTCCATCTCTCTCTC
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141980.1:349107-349126
CCTGAAGGAGGAGGACTACTACCTGATTTA349107CTCAAGGATTTCATGCCCACATTCTCTTCTCTCTCTTCCATCTCTCTCTC
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:335448-335467
CCTGAAGGAGGAGGACTACTACCTGATTTA335448CTCAAGGATTTCATGCCCACATTCTCTTCTCTCTCTTCCATCTCTCTCTC
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:325975-325994
CCTGAAGGAGGAGGACTACTAACTGATTTA325975CTCAAGGATTTCATGCCCACATTCTCCTCTCTCTCTTCCATCTCTTTCTC
Malus domestica genome assembly, chromosome: 11.
OU696687.1:340871-340890
CCTGAAGGAGGAGGACTACTACCTGATTTA340871CTCAAGGATTTCATGCCCACATTCTCTTCTCTCTCTTCCATCTCTCTCTC
Malus domestica genome assembly, chromosome: 11.
OU744552.1:370412-370431
CCTGAAGGAGGAGGACTACTAACTGATTTA370412CTCAAGGATTTCATGCCCACATTCTCCTCTCTCTCTTCCATCTCTTTCTC
Malus domestica genome assembly, chromosome: 11.
OU744963.1:357806-357825
CCTGAAGGAGGAGGACTACTACCTGATTTA357806CTCAAGGATTTCATGCCCACATTCTCTTCTCTCTCTTCCATCTCTCTCTC
Malus domestica genome assembly, chromosome: 11.
OU745001.1:339696-339715
CCTGAAGGAGGAGGACTACTACCTGATTTA339696CTCAAGGATTTCATGCCCACATTCTCTTCTCTCTCTTCCATCTCTCTCTC
010621AASC999129HT (AASC) Royal Gala 10 DAFB fruit Malus domestica cDNA clone AASC999129, mRNA sequence.
CN884860.1:10-29
GGAAGAGAT10GTGGGCATGAAATCCTTGAGTAAATCAGGTAGTAGTCCTCCTCCTTCAGG
010621AASC999350HT (AASC) Royal Gala 10 DAFB fruit Malus domestica cDNA clone AASC999350, mRNA sequence.
CN884977.1:10-29
GGAAGAGAT10GTGGGCATGAAATCCTTGAGTAAATCAGGTAGTAGTCCTCCTCCTTCAGG
Malus x robusta genome assembly, chromosome: 5.
OY720329.1:40955071-40955090
GAGAGAGAGATGGAAGAGAGAGAAGAGAAT40955071GTGGGCATGAAATCCTTGAGTAAATCAGGCAGTAGTCCTCCTCCTTCAGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTCAAGGATTTCATGCCCAC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTCAAGGATTTCATGCCCAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.098 | 0.090 | search_plus_done; http://172.18.8.135:50400/match?q=CTCAAGGATTTCATGCCCAC&k=0&no_gap=0&offset=0&limit=50
0.188 | 0.089 | search_minus_done; http://172.18.8.135:50400/match?q=GTGGGCATGAAATCCTTGAG&k=0&no_gap=0&offset=0&limit=40
0.189 | 0.002 | cgi_end;

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