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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 19:02:42, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Mus musculus genome assembly, chromosome: 4.
OW971568.1:100479915-100479934
TCATGTCCACTGTTTCCAGAGCCTGGGAGA100479915CTCAATCTCCTCTTCTCTCTTCCAGCCTGGAAGTGGTCACCCTGGAGACT
Mus musculus genome assembly, chromosome: 4.
OW971577.1:100241128-100241147
TCATGTCCACTGTTTCCAGAGCCTGGGAGA100241128CTCAATCTCCTCTTCTCTCTTCCAGCCTGGAAGTGGTCACCCTGGAGACT
Mus musculus genome assembly, chromosome: 4.
OW971597.1:100161835-100161854
TCATGTCCACTGTTTCCAGAGCCTGGGAGA100161835CTCAATCTCCTCTTCTCTCTTCCAGCCTGGAAGTGGTCACCCTGGAGACT
Mus musculus domesticus genome assembly, chromosome: 4.
OW971626.1:99829212-99829231
TCATGTCCACTGTTTCCAGAGCCTGGGAGA99829212CTCAATCTCCTCTTCTCTCTTCCAGCCTGGAAGTGGTCACCCTGGAGACT
Mus musculus genome assembly, chromosome: 4.
OW971639.1:99603571-99603590
TCATGTCCACTGTTTCCAGAGCCTGGGAGA99603571CTCAATCTCCTCTTCTCTCTTCCAGCCTGGAAGTGGTCACCCTGGAGACT
Mus musculus molossinus genome assembly, chromosome: 4.
OW971661.1:100977753-100977772
TCATGTCCACTGTTTCCAGAGCCTGGGAGA100977753CTCAATCTCCTCTTCTCTCTTCCAGCCTGGAAGTGGTCACCCTGGAGACT
Mus spretus genome assembly, chromosome: 4.
OW971682.1:100916153-100916172
TCATGTCCACTGTTTCCAGAGCCTGGGAAA100916153CTCAATCTCCTCTTCTCTCTTCCAGCCTGGAAGTGGTCACCCTGGAGACT
Mus musculus genome assembly, chromosome: 4.
OW971712.1:99153628-99153647
TCATGTCCACTGTTTCCAGAGCCTGGGAGA99153628CTCAATCTCCTCTTCTCTCTTCCAGCCTGGAAGTGGTCACCCTGGAGACT
Mus musculus genome assembly, chromosome: 2.
OW971721.1:7815886-7815905
CTCATGTCCACTGTTTCCAGACCTGGGAGA7815886CTCAATCTCCTCTTCTCTCTTCCAGCCTGGAAGTGTCACCCTGGAGACTG
Mus musculus genome assembly, chromosome: 4.
OW971723.1:100200657-100200676
CTCATGTCCACTGTTTCCAGACCTGGGAGA100200657CTCAATCTCCTCTTCTCTCTTCCAGCCTGGAAGTGTCACCCTGGAGACTG
Mus musculus genome assembly, chromosome: 4.
OW971723.1:100207204-100207223
TCATGTCCACTGTTTCCAGAGCCTGGGAGA100207204CTCAATCTCCTCTTCTCTCTTCCAGCCTGGAAGTGGTCACCCTGGAGACT
Mus musculus genome assembly, chromosome: 5.
OW971726.1:40016532-40016551
CTCATGTCCACTGTTTCCAGACCTGGGAGA40016532CTCAATCTCCTCTTCTCTCTTCCAGCCTGGAAGTGTCACCCTGGAGACTG
Mus musculus genome assembly, chromosome: 9.
OW971730.1:78897854-78897873
CTCATGTCCACTGTTTCCAGACCTGGGAGA78897854CTCAATCTCCTCTTCTCTCTTCCAGCCTGGAAGTGTCACCCTGGAGACTG
Mus musculus genome assembly, chromosome: 4.
OW971745.1:100741214-100741233
TCATGTCCACTGTTTCCAGAGCCTGGGAGA100741214CTCAATCTCCTCTTCTCTCTTCCAGCCTGGAAGTGGTCACCCTGGAGACT
Mus musculus musculus genome assembly, chromosome: 4.
OW971765.1:98690559-98690578
TCATGTCCACTGTTTCCAGAGCCTGGGAGA98690559CTCAATCTCCTCTTCTCTCTTCCAGCCTGGAAGTGGTCACCCTGGAGACT
Mus musculus genome assembly, chromosome: 4.
OW971786.1:99612683-99612702
TCATGTCCACTGTTTCCAGAGCCTGGGAGA99612683CTCAATCTCCTCTTCTCTCTTCCAGCCTGGAAGTGGTCACCCTGGAGACT
Mus musculus genome assembly, chromosome: 4.
OW971808.1:100938212-100938231
TCATGTCCACTGTTTCCAGAGCCTGGGAGA100938212CTCAATCTCCTCTTCTCTCTTCCAGCCTGGAAGTGGTCACCCTGGAGACT
Mus musculus castaneus genome assembly, chromosome: 4.
OW971838.1:99742784-99742803
TCATGTCCACTGTTTCCAGAGCCTGGGAGA99742784CTCAATCTCCTCTTCTCTCTTCCAGCCTGGAAGTGGTCACCCTGGAGACT
Mus musculus genome assembly, chromosome: 4.
OW971856.1:100608153-100608172
TCATGTCCACTGTTTCCAGAGCCTGGGAGA100608153CTCAATCTCCTCTTCTCTCTTCCAGCCTGGAAGTGGTCACCCTGGAGACT
Mus musculus genome assembly, chromosome: 4.
OX389798.1:109357831-109357850
TCATGTCCACTGTTTCCAGAGCCTGGGAGA109357831CTCAATCTCCTCTTCTCTCTTCCAGCCTGGAAGTGGTCACCCTGGAGACT
Mus musculus genome assembly, chromosome: 4.
OX390147.1:104240717-104240736
TCATGTCCACTGTTTCCAGAGCCTGGGAGA104240717CTCAATCTCCTCTTCTCTCTTCCAGCCTGGAAGTGGTCACCCTGGAGACT
Mus musculus genome assembly, chromosome: 4.
OX439018.1:112665808-112665827
TCATGTCCACTGTTTCCAGAGCCTGGGAGA112665808CTCAATCTCCTCTTCTCTCTTCCAGCCTGGAAGTGGTCACCCTGGAGACT
Bos mutus isolate yakQH1 chromosome 18.
CP027086.1:52834077-52834096
ATCTAACCAACGGGCTGCCCCTCTTTGAGC52834077CTCAATCTCCTCTTCTCTCTATTAGTTCCAATTATCTCACCTTTCTCTGA
Bos taurus genome assembly, chromosome: 18.
LR962748.1:51181255-51181274
ATCTAACCAACTGGCTGCCCCTCTTTGAGC51181255CTCAATCTCCTCTTCTCTCTATTAGTTCCAATTATCTCACCTTTCTCTGA
Bos gaurus x Bos taurus genome assembly, chromosome: 18.
OX258972.1:53072196-53072215
ATCTAACCAACTGGCTGCCCCTCTTTGAGC53072196CTCAATCTCCTCTTCTCTCTATTAGTTCCAATTATCTCACCTTTCTCTGA
Bos taurus strain mammals genome assembly, chromosome: 18.
OX344707.1:54386826-54386845
ATCTAACCAACTGGCTGCCCCTCTTTGAGC54386826CTCAATCTCCTCTTCTCTCTATTAGTTCCAATTATCTCACCTTTCTCTGA
Bos taurus genome assembly, chromosome: Bta18.
OY997246.1:55017238-55017257
ATCTAACCAACTGGCTGCCCCTCTTTGAGC55017238CTCAATCTCCTCTTCTCTCTATTAGTTCCAATTATCTCACCTTTCTCTGA
Cottoperca gobio genome assembly, chromosome: 14.
LR131921.1:19468449-19468468
CTTTTGATATCTCCTTGTCTCACATTCTTT19468449CTCAATCTCCTCTTCTCTCTCACTCTCATTCTCTAGCTGGTCTGCATCCT
Coregonus sp. 'balchen' genome assembly, chromosome: 31.
LR778283.1:33930288-33930307
ATTCCATCGACATACCACCTTACGCATAGA33930288CTCAATCTCCTCTTCTCTCTCACTATAGTCAAGGCTTGCCTTTGAAAACA
Platichthys flesus genome assembly, chromosome: 19.
OX438734.1:5073810-5073829
CTCCATCTCCTCTCATCTTCTTCCTCTCCT5073810CTCAATCTCCTCTTCTCTCTTCTCATTTTCCTCTACCTCTTTGTCCCCAT
EST897644 BEA Rhipicephalus microplus cDNA clone BEAET57, mRNA sequence.
CV443731.1:399-418
CCTCGCGTCAGCCAACTTCGCCATGTTTTT399CTCAATCTCCTCTTCTCTCTGACGACGCTCCTCCGTCTCGGCCTTATGCT
Manihot esculenta mRNA, clone: CAS01_014_P08, 5'end.
DB925086.1:6-25
GACAT6CTCAATCTCCTCTTCTCTCTCTCAATAGCTCCATAATTTTCACGTTGTTT
Manihot esculenta mRNA, clone: CAS01_027_M07, 5'end.
DB929704.1:6-25
GACAT6CTCAATCTCCTCTTCTCTCTCTCAATAGCTCCATAATTTTCACGTTGTTT
GQ02806.SP6_F10 GQ028 - Cambium / phloem scrappings (Normalized library) Picea glauca cDNA clone GQ02806_F10 3', mRNA sequence.
EX314008.1:696-715
GGCAGAAGGCACCTTTTCATGCAACAACTG696CTCAATCTCCTCTTCTCTCTTCTCTATGCTGTTCTCCAGTTCACTTCTTT
U_UZ-100602_plate11h21.b1 Full-length enriched cDNA library of cassava MPER417-003 Manihot esculenta subsp. peruviana cDNA, mRNA sequence.
JG991136.1:6-25
GGCAT6CTCAATCTCCTCTTCTCTCTCTCAATAGCTCCATAATTTTCACGTTGTTT
U_UZ-100602_plate43i01.b1 Full-length enriched cDNA library of cassava MPER417-003 Manihot esculenta subsp. peruviana cDNA, mRNA sequence.
JK001610.1:23-42
CATCTTCCATCACGACCCACAT23CTCAATCTCCTCTTCTCTCTCTCAATAGCTCCATAATTTTCACGTTGTTT
TSA: Larix kaempferi PEMC22739.Lakaproemb mRNA sequence.
JR153240.1:660-679
AAACTCAACCTCCTTTTCATGCAACAACCT660CTCAATCTCCTCTTCTCTCTTCGCAATGCTGTTCTCCAGTTCACTTCTTT
MH177K14-MR MECABa Manihot esculenta genomic, genomic survey sequence.
HR885496.1:157-176
ACGTCTCACTTCCACTCACCATACCCACAT157CTCAATCTCCTCTTCTCTCTCTCAATAGCTCCATAATTTTCACGTTGTTT
MH177K14b-MR MECABa Manihot esculenta genomic, genomic survey sequence.
JM113333.1:99-118
ACGTCTCACTTCCACTCACCATACCCACAT99CTCAATCTCCTCTTCTCTCTCTCAATAGCTCCATAATTTTCACGTTGTTT
Bos taurus clone CH240-280L21, WORKING DRAFT SEQUENCE, 15 unordered pieces.
AC171660.4:185349-185368
ATCTAACCAACTGGCTGCCCCTCTTTGAGC185349CTCAATCTCCTCTTCTCTCTATTAGTTCCAATTATCTCACCTTTCTCTGA
Glycine max cultivar Williams 82 chromosome 1.
CP126426.1:17982319-17982338
GTTGGGTTGAATAATATTGGTTTTCTCAAT17982319CTCAATCTCCTCTTCTCTCTCTAATTCTCTAAACTCTTTTACATATATTT
Glycine max cultivar Williams 82 chromosome 4.
CP126429.1:50814526-50814545
AGTTGGGTTGAAGAATATTGGTTTCTCAAT50814526CTCAATCTCCTCTTCTCTCTCAAGTTCTATCAACTCTTTTATGGTATTCA
Triticum aestivum genome assembly, chromosome: 4A.
LR862517.1:629635206-629635225
CGGACCTACATGTTATAATATATCTTCTTC629635206CTCAATCTCCTCTTCTCTCTCCTAGCGTTCATATTCTTCCTGGATACTGG
Triticum aestivum genome assembly, chromosome: 4A.
LR862538.1:623867193-623867212
CGGACCTACATGTTATAATATATCTTCTTC623867193CTCAATCTCCTCTTCTCTCTCCTAGCGTTCATATTCTTCCTGGATACTGG
Triticum aestivum genome assembly, chromosome: 4A.
LR862559.1:628919783-628919802
CGGACCTACATGTTATAATATATCTTCTTC628919783CTCAATCTCCTCTTCTCTCTCCTAGCGTTCATATTCTTCCTGGATACTGG
Triticum aestivum genome assembly, chromosome: 4A.
LR865467.1:620588326-620588345
CGGACCTACATGTTATAATATATCTTCTTC620588326CTCAATCTCCTCTTCTCTCTCCTAGCGTTCATATTCTTCCTGGATACTGG
Triticum aestivum genome assembly, chromosome: 4A.
LR865488.1:625125460-625125479
CGGACCTACATGTTATAATATATCTTCTTC625125460CTCAATCTCCTCTTCTCTCTCCTAGCGTTCATATTCTTCCTGGATACTGG
Triticum aestivum genome assembly, chromosome: 4A.
LR865509.1:633944034-633944053
CGGACCTACATGTTATAATATATCTTCTTC633944034CTCAATCTCCTCTTCTCTCTCCTAGCGTTCATATTCTTCCTGGATACTGG
Triticum aestivum genome assembly, chromosome: 4A.
LR865748.1:636653844-636653863
CGGACCTACATGTTATAATATATCTTCTTC636653844CTCAATCTCCTCTTCTCTCTCCTAGCGTTCATATTCTTCCTGGATACTGG
Triticum aestivum genome assembly, chromosome: 4A.
LR865769.1:623346674-623346693
CGGACCTACATGTTATAATATATCTTCTTC623346674CTCAATCTCCTCTTCTCTCTCCTAGCGTTCATATTCTTCCTGGATACTGG
Triticum aestivum genome assembly, chromosome: 4A.
LR877318.1:633401368-633401387
CGGACCTACATGTTATAATATATCTTCTTC633401368CTCAATCTCCTCTTCTCTCTCCTAGCGTTCATATTCTTCCTGGATACTGG
Triticum aestivum genome assembly, chromosome: 4A.
LR878444.1:622201719-622201738
CGGACCTACATGTTATAATATATCTTCTTC622201719CTCAATCTCCTCTTCTCTCTCCTAGCGTTCATATTCTTCCTGGATACTGG
Triticum aestivum genome assembly, chromosome: 4A.
LS992089.1:629488449-629488468
CGGACCTACATGTTATAATATATCTTCTTC629488449CTCAATCTCCTCTTCTCTCTCCTAGCGTTCATATTCTTCCTGGATACTGG
Triticum turgidum subsp. durum genome assembly, chromosome: 4A.
LT934117.1:623682985-623683004
CGGACCTACATGTTATAATATATCTTCTTC623682985CTCAATCTCCTCTTCTCTCTCCTAGCGTTCATATTCTTCCTGGATACTGG
Triticum aestivum genome assembly, chromosome: 4A.
OU015730.1:630860548-630860567
CGGACCTACATGTTATAATATATCTTCTTC630860548CTCAATCTCCTCTTCTCTCTCCTAGCGTTCATATTCTTCCTGGATACTGG
Triticum aestivum genome assembly, chromosome: 4A.
OU343172.1:633975547-633975566
CGGACCTACATGTTATAATATATCTTCTTC633975547CTCAATCTCCTCTTCTCTCTCCTAGCGTTCATATTCTTCCTGGATACTGG
Triticum aestivum genome assembly, chromosome: 4A.
OU963881.1:632437985-632438004
CGGACCTACATGTTATAATATATCTTCTTC632437985CTCAATCTCCTCTTCTCTCTCCTAGCGTTCATATTCTTCCTGGATACTGG
Triticum aestivum genome assembly, chromosome: 4A.
OV100746.1:630217682-630217701
CGGACCTACATGTTATAATATATCTTCTTC630217682CTCAATCTCCTCTTCTCTCTCCTAGCGTTCATATTCTTCCTGGATACTGG
Triticum aestivum genome assembly, chromosome: 4A.
OW530319.1:630217682-630217701
CGGACCTACATGTTATAATATATCTTCTTC630217682CTCAATCTCCTCTTCTCTCTCCTAGCGTTCATATTCTTCCTGGATACTGG
Sambucus nigra genome assembly, chromosome: 7.
OX422213.1:39544562-39544581
GGTAGCAACAATCCAAGCTTCAATCTCTCT39544562CTCAATCTCCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
Sambucus nigra genome assembly, chromosome: 16.
OX422222.1:43040453-43040472
AATCCCCATTCTTCAATCTCCAATCTCTCT43040453CTCAATCTCCTCTTCTCTCTCTCTCTCTCTCTTATTTTGGATATGAAATA
Triticum aestivum genome assembly, chromosome: 4A.
OX637234.1:527511448-527511467
CGGACCTACATGTTATAATATATCTTCTTC527511448CTCAATCTCCTCTTCTCTCTCCTAGCGTTCATATTCTTCCTGGATACTGG
Macrobrachium nipponense isolate FS-2020 chromosome 27.
CP062030.1:60004780-60004799
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCT60004780CTCAATCTCCTCTTCTCTCTCTCTCCCTCTCTATATATAGATATATATAT
Macrobrachium nipponense isolate FS-2020 chromosome 9.
CP062053.1:18941299-18941318
TCTCTCTGTTTCTCTCTCTCTCTCTCTCTT18941299CTCAATCTCCTCTTCTCTCTCTCTCTGAGTCTGCCTGGTTTGTTCCCTCT
Tiphia femorata genome assembly, chromosome: 10.
OX090904.1:5043373-5043392
GCCTGGTCGATATTTTTCCTCGAGAATTCT5043373CTCAATCTCCTCTTCTCTCTCGCCAGCTTCTCGTAACAAGTTGCCGCGTC
Rhogogaster chlorosoma genome assembly, chromosome: 3.
OX101799.1:4861084-4861103
TTAGCCCCCTGCCCGCCCTTTCCCCTGCCT4861084CTCAATCTCCTCTTCTCTCTCGCTGTCGCACTCTCTCACCCTGAAATGGG
Amaurobius ferox genome assembly, chromosome: 14.
OX578149.1:27736941-27736960
TCTCTCCTCTCCTCTCACCTCTTCTCTCTT27736941CTCAATCTCCTCTTCTCTCTTCTCAATCTCCTCTTCTCTCTTCTCAATCT
Amaurobius ferox genome assembly, chromosome: 14.
OX578149.1:27736962-27736981
TTCTCTCTTCTCAATCTCCTCTTCTCTCTT27736962CTCAATCTCCTCTTCTCTCTTCTCAATCTCCTTTTCTCTCTTCTCACTCT
Amaurobius ferox genome assembly, chromosome: 14.
OX578149.1:27737249-27737268
TCTCTCCTCTCCTCTCACCTCTTCTCTCTT27737249CTCAATCTCCTCTTCTCTCTTCTCAATCTCCTCTTCTCTCTTCTCAATCT
Amaurobius ferox genome assembly, chromosome: 14.
OX578149.1:27737270-27737289
TTCTCTCTTCTCAATCTCCTCTTCTCTCTT27737270CTCAATCTCCTCTTCTCTCTTCTCAATCTCCTCTTCTCTCTTCTCACTCT
Amaurobius ferox genome assembly, chromosome: 14.
OX578149.1:27737291-27737310
TTCTCTCTTCTCAATCTCCTCTTCTCTCTT27737291CTCAATCTCCTCTTCTCTCTTCTCACTCTTCCCTTCTCTCTCCTATATCG
Amaurobius ferox genome assembly, chromosome: 14.
OX578149.1:27737542-27737561
CTTCTCTCCTCTCATCACTTCTTCTCTCTT27737542CTCAATCTCCTCTTCTCTCTTCCAACACTTCTCTTCTCTCTCTTCCCTTT
Sepiola atlantica genome assembly, chromosome: 22.
OY744536.1:51051714-51051733
TATTTCACCCCCTACTCTGTCTCGCTCTCG51051714CTCAATCTCCTCTTCTCTCTCTATCCCTCTTTCTCTCTTTCTCTTATACT
Sepiola atlantica genome assembly, chromosome: 23.
OY744537.1:65976402-65976421
TAGTCACAGTAGTGATTTGGCAGCTAAAGT65976402CTCAATCTCCTCTTCTCTCTAGCATTGTAGATGTCTTCTTTTTCTCAATA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTCAATCTCCTCTTCTCTCT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTCAATCTCCTCTTCTCTCT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.557 | 0.549 | search_plus_done; http://172.18.8.135:50400/match?q=CTCAATCTCCTCTTCTCTCT&k=0&no_gap=0&offset=0&limit=50
0.634 | 0.077 | search_minus_done; http://172.18.8.135:50400/match?q=AGAGAGAAGAGGAGATTGAG&k=0&no_gap=0&offset=0&limit=0
0.634 | 0.000 | cgi_end;

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