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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 08:31:20, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

OL3871F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL3871, mRNA sequence.
EH419335.1:692-711
CTTCTGCTTCCACACCCGACAGATCTGGAT692CTCGACACTTTCCTCTCGCTCGG
0208441 Brassica napus Very early anther Brassica napus cDNA, mRNA sequence.
EV142509.1:575-594
CTTCTGCTTCCACACCCGACCGATCTGGAT575CTCGACACTTTCCTCTCGCTCGGTGGTGCTGCTGTAGCCACAACGTTGGG
0081169 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV157307.1:80-99
CTTCTGCTTCCACACCCGACCGATCTGGAT80CTCGACACTTTCCTCTCGCTCGGTGGTGCTGCTGTAGCCACAACGTTGGG
RS3DM81JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
EY943902.1:632-651
CTTCTGCTCCCACACCCAACGGATCTGGAT632CTCGACACTTTCCTCTCGCTCGGTGGAACCACAACGTTGGGGCTTCCATC
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_13196.
FX700022.1:656-675
CTTCTGCTTCCACACCCGACAGATCTGGAT656CTCGACACTTTCCTCTCGCTCGGTGGTGCTGCTGTAGCCGCAACGTTGGG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_45061.
FX735581.1:533-552
CTTCTGCTTCCACACCCGACAGATCTGGAT533CTCGACACTTTCCTCTCGCTCGGTGGTGCTGCTGTAGCCACAACGTTGGG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_20238.
FX791788.1:660-679
CTTCTGCTCCCACACCCAACGGATCTGGAT660CTCGACACTTTCCTCTCGCTCGGTGGAACCACAACGTTGGGGCTTCCATC
TSA: Pachycladon fastigiatum 25550_844_6989_7_41.Pafaleaf mRNA sequence.
JR007857.1:319-338
CTTCTGCTTCCACACCCAACAGATCTAGAT319CTCGACACTTTCCTCTCGCTTGGTGTGACTTCAATGTTAGGACTTCCATC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' linkage group A02 clone KBrB061A20, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.
AC234720.1:61246-61265
CTTCTGCTTCCACACCCGACAGATCTGGAT61246CTCGACACTTTCCTCTCGCTCGGTGGTGCTGCTGTAGCCGCAACGTTGGG
Brassica napus genome assembly, chromosome: C07.
HG994371.1:41814214-41814233
CTTCTGCTTCCACACCCGACAGATCTGGAT41814214CTCGACACTTTCCTCTCGCTCGGTGGTGCTGCTGCAACGTTGGGGCTTCC
Brassica oleracea HDEM genome, scaffold: C7.
LR031876.1:44740050-44740069
CTTCTGCTTCCACACCCGACAGATCTGGAT44740050CTCGACACTTTCCTCTCGCTCGGCGGTGCTGCCGCAACGTTGGGGCTTCC
Raphanus sativus genome assembly, chromosome: 2.
LR778311.1:42561797-42561816
CTTCTGCTCCCACACCCAACGGATCTGGAT42561797CTCGACACTTTCCTCTCGCTCGGTGGAACCACAACGTTGGGGCTTCCATC
4ETGS72H_UP_001_G06_16MAY2003_018 Brassica napus 4ETGS72h Brassica napus cDNA 5', mRNA sequence.
CN726917.1:62-81
CCCAACGTTGTGGCTACAGCAGCACCACCG62AGCGAGAGGAAAGTGTCGAGATCCAGATCGGTCGGGTGTGGAAGCAGAAG
Brassica oleracea var. viridis mRNA, clone: KALE-076N13, 3' end sequence.
DK544522.1:83-102
CCCAACGTTGTGGCTACAGTAGCAACACTG83AGCGAGAGGAAAGTGTCGAGATCCAGATCTGTCGGGTGTGGAAGCAGAAG
Brassica oleracea var. viridis mRNA, clone: KALE-147D05, 3' end sequence.
DK571400.1:157-176
CCCAACGTTGTGGCTACAGTAGCAACACTG157AGCGAGAGGAAAGTGTCGAGATCCAGATCTGTCGGGTGTGGAAGCAGAAG
OL3871R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL3871, mRNA sequence.
EH419339.1:76-95
GGAAGCCCCAACGTTGCGGCAGCACCGCCG76AGCGAGAGGAAAGTGTCGAGATCCAGATCTGTCGGGTGTGGAAGCAGAAG
BNSCS2CT_UP_145_E09_23APR2007_071 Brassica napus BNSCS2CT Brassica napus cDNA 5', mRNA sequence.
EV026484.1:252-271
CCCAACGTTGTGGCTACAGCAGCACCACCG252AGCGAGAGGAAAGTGTCGAGATCCAGATCGGTCGGGTGTGGAAGCAGAAG
BNSCS2CT_UP_212_B01_28APR2007_013 Brassica napus BNSCS2CT Brassica napus cDNA 5', mRNA sequence.
EV031260.1:630-649
CCCAACGTTGTGGCTACAGCAGCACCACCG630AGCGAGAGGAAAGTGTCGAG
0208653 Brassica napus Very early anther Brassica napus cDNA, mRNA sequence.
EV142721.1:422-441
CCCAACGTTGTGGCTACAGCAGCACCACCG422AGCGAGAGGAAAGTGTCGAGATCCAGATCGGTCGGGTGTGGAAGCAGAAG
BR030979 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-003G04 5', mRNA sequence.
EX046335.1:181-200
CCCAACGTTGCGGCTACAGCAGCACCACCG181AGCGAGAGGAAAGTGTCGAGATCCAGATCTGTCGGGTGTGGAAGCAGAAG
BR110526 etiolated mature leaf cDNA library KHLW Brassica rapa subsp. pekinensis cDNA clone KHLW-16D08 5', mRNA sequence.
EX126696.1:421-440
CCCAACGTTGCGGCTACAGCAGCACCACCG421AGCGAGAGGAAAGTGTCGAGATCCAGATCTGTCGGGTGTGGAAGCAGAAG
RS1CE40TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EX889232.1:53-72
GATGGAAGCCCCAACGTCGTGGTTCCACCG53AGCGAGAGGAAAGTGTCGAGATCCAGATCCGTTGGGTGTGGGAGCAGAAG
RS3EA05TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
EY950247.1:28-47
GGGAAGCCCCAACGTTGTGGTCCACCG28AGCGAGAGGAAAGTGTCGAGATCCAGATCCGTTGGGTGTGGGAGCAGAAG
BNAOV1GH_T3_062_F01_14SEPT2007_005 BNAOV1GH Brassica napus cDNA 5', mRNA sequence.
GR447075.1:68-87
GGAAGCCCCAACGTTGCGGCAGCACCGCCG68AGCGAGAGGAAAGTGTCGAGATCCAGATCTGTCGGGTGTGGAAGCAGAAG
TSA: Raphanus sativus var. sativus RNA, contig: WG3_1135.
FX660123.1:991-1010
GATGGAAGCCCCAACGTTGTGGTTCCACCG991AGCGAGAGGAAAGTGTCGAGATCCAGATCCGTTGGGTGTGGGAGCAGAAG
TSA: Raphanus sativus RS28303 mRNA sequence.
JT812850.1:468-487
GATGGAAGCCCCAACGTTGTGGTTCCACCG468AGCGAGAGGAAAGTGTCGAGATCCAGATCCGTTGGGTGTGGGAGCAGAAG
Brassica napus cultivar Xiang5A chromosome 10.
CP123885.1:54543408-54543427
CCCAACGTTGCGGCTACAGCAGCACCACCG54543408AGCGAGAGGAAAGTGTCGAGATCCAGATCTGTCGGGTGTGGAAGCAGAAG
Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:14103281-14103300
CCCAACGTTGTGGCTACAGTAGCAACACTG14103281AGCGAGAGGAAAGTGTCGAGATCCAGATCTGTCGGGTGTGGAAGCAGAAG
Brassica napus genome assembly, chromosome: A06.
HG994360.1:39555591-39555610
GGGAGCCCCAACGTTGCGGCAGCACCACCG39555591AGCGAGAGGAAAGTGTCGAGATCCAGATCTGTCGGGTGTGGAAGCAGAAG
Brassica rapa genome, scaffold: A06.
LR031569.1:49610069-49610088
CCCAACGTTGCGGCTACAGCAGCACCACCG49610069AGCGAGAGGAAAGTGTCGAGATCCAGATCTGTCGGGTGTGGAAGCAGAAG
Brassica rapa genome assembly, chromosome: A06.
LS974622.2:53227323-53227342
CCCAACGTTGCGGCTACAGCAGCACCACCG53227323AGCGAGAGGAAAGTGTCGAGATCCAGATCTGTCGGGTGTGGAAGCAGAAG
Raphanus sativus genome assembly, chromosome: 4.
OY743210.1:11088704-11088723
GATGGAAGCCCCAACGTTGTGGTTCCACCG11088704AGCGAGAGGAAAGTGTCGAGATCCAGATCCGTTGGGTGTGGGAGCAGAAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTCGACACTTTCCTCTCGCT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTCGACACTTTCCTCTCGCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.346 | 0.337 | search_plus_done; http://172.18.8.135:50400/match?q=CTCGACACTTTCCTCTCGCT&k=0&no_gap=0&offset=0&limit=50
0.947 | 0.601 | search_minus_done; http://172.18.8.135:50400/match?q=AGCGAGAGGAAAGTGTCGAG&k=0&no_gap=0&offset=0&limit=38
0.960 | 0.013 | cgi_end;

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