GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 07:59:26, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Cenchrus purpureus cultivar elephant grass chromosome A7.
CP053460.1:131498388-131498407
TAGCAGCGCGGCACAGCCCCGACGGGGACC131498388CTCTCTGACGCCTTCTCACCGGTAAGCGTCTCCCTCTTCCTTCCCCTCTC
Musa acuminata subsp. malaccensis isolate AA chromosome 1.
CP126370.1:15456650-15456669
CCACCATCCCGCAGCTCAGCTCTTTTCCTG15456650CTCTCTGACGCCTTCTCACCTGCACCAGCATCCTCCCGACAAACCGGACA
Musa acuminata subsp. malaccensis isolate AA chromosome 12.
CP126381.1:15664607-15664626
CCACCATCCCGCAGCTCAGCTCTTTTCCTG15664607CTCTCTGACGCCTTCTCACCTGCACCAGCATCCTCCCGACAAACCGGACA
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A01.
HG996466.1:7645818-7645837
CCACCATCCCGCAGCTCAGCTCTTTTCCTG7645818CTCTCTGACGCCTTCTCACCTGCACCAGCATCCTCCCGACAAACCGGACA
Musa schizocarpa genome assembly, chromosome: S01.
LS990915.1:8164934-8164953
CCACCATCCCGCAGCTCAGCTCTTTTCCTG8164934CTCTCTGACGCCTTCTCACCTCCACCAGCATCCTCCCGACAAACCGGACA
Cenchrus purpureus cultivar elephant grass chromosome A7.
CP053460.1:170997-171016
GCAATCGGCCGGGAGAGGGGAAGGAAGACC170997GGTGAGAAGGCGTCAGAGAGGGTCCCCGTCGGGGCTGTGCCGCGCTGCTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTCTCTGACGCCTTCTCACC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTCTCTGACGCCTTCTCACC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.117 | 0.108 | search_plus_done; http://172.18.8.135:50400/match?q=CTCTCTGACGCCTTCTCACC&k=0&no_gap=0&offset=0&limit=50
0.147 | 0.030 | search_minus_done; http://172.18.8.135:50400/match?q=GGTGAGAAGGCGTCAGAGAG&k=0&no_gap=0&offset=0&limit=45
0.147 | 0.001 | cgi_end;

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