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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 01:06:37, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Raphanus sativus var. sativus RNA, contig: WG3_8924.
FX658893.1:1417-1436
GAGGGAGAGAGGGGGGAGAAGACGGCGGAG1417CTCTGCATCGTGGGAGATCTGAGTGAGATGTTTGGTGAAGGCGTGAGTTC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_8416.
FX747930.1:877-896
AGGGAGGGAGAGAGGGAGAAGACGGCGGAG877CTCTGCATCGTGGGAGATCTGAGTGAGATGTTTGGGGAAGGCGTGAGTTC
BOHGU31TF BOHG Brassica oleracea genomic clone BOHGU31, genomic survey sequence.
BH431244.1:232-251
AGGGAGGGAGAGGCGGAGAAGACGGCGGAG232CTCTGCATCGTGGGAGATCTGAGAGAAGGCGTTGGAGACTCCGTCGAGTG
SP__Ba0087M20.r SP__Ba Sorghum propinquum genomic clone SP__Ba0087M20 3', genomic survey sequence.
CW792058.1:333-352
CGCCCGCCCACCTCTGGAGTCCAATCAGGA333CTCTGCATCGTGGGAGATCTCCACCGACCTAAAGGATCAAGGATAACCAT
Brassica napus cultivar Xiang5A chromosome 7.
CP123882.1:14333376-14333395
AGGGAGGGAGAGAGGGAGAAGACGGCGGAG14333376CTCTGCATCGTGGGAGATCTGAGAGAAGGCGTTGGAGACTCCGTCGAGTG
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:34370198-34370217
AGGGAGGGAGAGGCGGAGAAGACGGCGGAG34370198CTCTGCATCGTGGGAGATCTGAGAGAAGGCGTTGGAGACTCCGTCGAGTG
Sorghum bicolor cultivar Hongyingzi chromosome 1.
CP137825.1:49145280-49145299
CGCCTGCCCCCTCTGGGAGTCCAATCAGGA49145280CTCTGCATCGTGGGAGATCTCCACCGACCTAAAGGATGAATCTAAACCAT
Sorghum bicolor cultivar Hongyingzi chromosome 4.
CP137828.1:12297675-12297694
CGCCCGCCCACCTCCTGAGGCCAATCAGGA12297675CTCTGCATCGTGGGAGATCTCCACCGACCCAAAGGATGAATCTAAACCAT
Sorghum bicolor cultivar Hongyingzi chromosome 9.
CP137833.1:43548943-43548962
TGCCCGCCCCCTCTGGGAGTCTAATCAGGA43548943CTCTGCATCGTGGGAGATCTCCACCGACCTAAAGGATGAATCTAAACCAT
Sorghum bicolor cultivar Huandiaonuo chromosome 1.
CP137835.1:53275909-53275928
CGCCTGCCCCCTCTGGGAGTCCAATCAGGA53275909CTCTGCATCGTGGGAGATCTCCACCGACCTAAAGGATGAATCTAAACCAT
Sorghum bicolor cultivar Huandiaonuo chromosome 4.
CP137838.1:12275657-12275676
CGCCCGCCCACCTCCTGAGGCCAATCAGGA12275657CTCTGCATCGTGGGAGATCTCCACCGACCCAAAGGATGAATCTAAACCAT
Sorghum bicolor cultivar Huandiaonuo chromosome 9.
CP137843.1:43104790-43104809
TGCCCGCCCCCTCTGGGAGTCTAATCAGGA43104790CTCTGCATCGTGGGAGATCTCCACCGACCTAAAGGATGAATCTAAACCAT
Raphanus sativus genome assembly, chromosome: 8.
OY743205.1:15244575-15244594
AGGGAGGGAGAGAGGGAGAAGACGGCGGAG15244575CTCTGCATCGTGGGAGATCTGAGTGAGATGTTTGGGGAAGGCGTGAGTTC
Raja brachyura genome assembly, chromosome: 4.
OY740784.1:86041391-86041410
CGAGGCGGCGTCCGGACAGCAATGGCGGCC86041391AGATCTCCCACGATGCAGAGGGAGGGAGAAAGTGCCCGGCGCCGACCAGT
Sequence 1 from Patent WO9725346.
A93887.1:2-21
C2AGATCTCCCACGATGCAGAGCTCCGCCGTCTTCTCCGCCTCTCCCTCCCT
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE02a011H14_T7.
AM390264.1:60-79
CACTCGACGGAGTCTCCAACGCCTTCTCTC60AGATCTCCCACGATGCAGAGCTCCGCCGTGTTCTCCCTCTCTCCCTCGCT
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE02a014L01_T7.
AM390942.1:60-79
CACTCGACGGAGTCTCCAACGCCTTCTCTC60AGATCTCCCACGATGCAGAGCTCCGCCGTGTTCTCCCTCTCTCCCTCGCT
E0654 Chinese cabbage etiolated seedling library Brassica rapa subsp. pekinensis cDNA clone E0654, mRNA sequence.
BG543168.1:80-99
CACTCGACGGAGTCTCCAACGCCTTCTCTC80AGATCTCCCACGATGCAGAGCTCCGCCGTCTTCTCCCTCTCTCCCTCGCT
BN25.071E21F020325 BN25 Brassica napus cDNA clone BN25071E21, mRNA sequence.
CD828608.1:80-99
CACTCGACGGAGTCTCCAACGCCTTCTCTC80AGATCTCCCACGATGCAGAGCTCCGCCGTCTTCTCCCTCTCTCCCTCCCT
BN45.044D21F011228 BN45 Brassica napus cDNA clone BN45044D21, mRNA sequence.
CD835079.1:54-73
CACTCGATGGAGTCTCCAACGCCTTCTCTC54AGATCTCCCACGATGCAGAGCTCCGCCGTCTTCTCCCTCTCTCCCTCCCT
24RDBNH_UP_010_F08_19DEC2003_054 Brassica napus 24RDBNH Brassica napus cDNA 5', mRNA sequence.
CN730646.1:85-104
CACTCGACGGAGCCTCCAACGCCTTCTCTC85AGATCTCCCACGATGCAGAGCTCCGCCGTCTTCTCCCTCTCTCCCTCGCT
50-E011255-021-008-D13-T7R ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022D138Q, mRNA sequence.
CX191750.1:34-53
CACTCGACGGAGTCTCCAACGCCTTCTCTC34AGATCTCCCACGATGCAGAGCTCCGCCGTCTTCTCCCTCTCTCCCTCCCT
38RDBRM_UP_006_F11_31MAR2004_085 Brassica rapa 38RDBRM Brassica rapa cDNA 5', mRNA sequence.
CX266079.1:125-144
CACTCGACGGAGTCTCCAACGCCTTCTCTC125AGATCTCCCACGATGCAGAGCTCCGCCGTCTTCTCCCTCTCTCCCTCCCT
38RDBRM_UP_032_E03_13JUL2004_023 Brassica rapa 38RDBRM Brassica rapa cDNA 5', mRNA sequence.
CX268243.1:218-237
CACTCGACGGAGTCTCCAGCGCCTTCTCTC218AGATCTCCCACGATGCAGAGCTCCGCCGTCTTCTCCCTCTCTCCCTCCCT
38RDBRM_UP_035_D09_13JUL2004_073 Brassica rapa 38RDBRM Brassica rapa cDNA 5', mRNA sequence.
CX268489.1:189-208
CACTCGACGGAGTCTCCAACGCCTTCTCTC189AGATCTCCCACGATGCAGAGCTCCGCCGTCTTCTCCCTCTCTCCCTCCCT
38RDBRM_UP_050_C09_16JUL2004_075 Brassica rapa 38RDBRM Brassica rapa cDNA 5', mRNA sequence.
CX269562.1:72-91
CACTCGACGGAGTCTCCAACGCCTTCTCTC72AGATCTCCCACGATGCAGAGCTCCGCCGTCTTCTCCCTCTCTCCCTCCCT
Brassica oleracea var. viridis mRNA, clone: KALE-004G15, 5' end sequence.
DK457248.1:88-107
CACTCGACGGAGTCTCCAACGCCTTCTCTC88AGATCTCCCACGATGCAGAGCTCCGCCGTGTTCTCCCTCTCTCCCTCGCT
Brassica oleracea var. viridis mRNA, clone: KALE-005A24, 5' end sequence.
DK457495.1:85-104
CACTCGACGGAGTCTCCAACGCCTTCTCTC85AGATCTCCCACGATGCAGAGCTCCGCCGTGTTCTCCCTCTCTCCCTCGCT
Brassica oleracea var. viridis mRNA, clone: KALE-007B17, 5' end sequence.
DK458274.1:88-107
CACTCGACGGAGTCTCCAACGCCTTCTCTC88AGATCTCCCACGATGCAGAGCTCCGCCGTGTTCTCCCTCTCTCCCTCGCT
Brassica oleracea var. viridis mRNA, clone: KALE-009I08, 5' end sequence.
DK459194.1:73-92
CACTCGACGGAGTCTCCAACGCCTTCTCTC73AGATCTCCCACGATGCAGAGCTCCGCCGTGTTCTCCCTCTCTCCCTCGCT
Brassica oleracea var. viridis mRNA, clone: KALE-010C22, 5' end sequence.
DK459444.1:86-105
CACTCGACGGAGTCTCCAACGCCTTCTCTC86AGATCTCCCACGATGCAGAGCTCCGCCGTGTTCTCCCTCTCTCCCTCGCT
Brassica oleracea var. viridis mRNA, clone: KALE-016C07, 5' end sequence.
DK461725.1:62-81
CACTCGACGGAGTCTCCAACGCCTTCTCTC62AGATCTCCCACGATGCAGAGCTCCGCCGTGTTCTCCCTCTCTCCCTCGCT
Brassica oleracea var. viridis mRNA, clone: KALE-030M22, 5' end sequence.
DK467321.1:88-107
CACTCGACGGAGTCTCCAACGCCTTCTCTC88AGATCTCCCACGATGCAGAGCTCCGCCGTGTTCTCCCTCTCTCCCTCGCT
Brassica oleracea var. viridis mRNA, clone: KALE-035G03, 5' end sequence.
DK469073.1:75-94
CACTCGACGGAGTCTCCAACGCCTTCTCTC75AGATCTCCCACGATGCAGAGCTCCGCCGTGTTCTCCCTCTCTCCCTCGCT
Brassica oleracea var. viridis mRNA, clone: KALE-046C11, 5' end sequence.
DK473185.1:75-94
CACTCGACGGAGTCTCCAACGCCTTCTCTC75AGATCTCCCACGATGCAGAGCTCCGCCGTGTTCTCCCTCTCTCCCTCGCT
Brassica oleracea var. viridis mRNA, clone: KALE-047L11, 5' end sequence.
DK473785.1:73-92
CACTCGACGGAGTCTCCAACGCCTTCTCTC73AGATCTCCCACGATGCAGAGCTCCGCCGTGTTCTCCCTCTCTCCCTCGCT
Brassica oleracea var. viridis mRNA, clone: KALE-060H23, 5' end sequence.
DK478674.1:79-98
CACTCGACGGAGTCTCCAACGCCTTCTCTC79AGATCTCCCACGATGCAGAGCTCCGCCGTGTTCTCCCTCTCTCCCTCGCT
Brassica oleracea var. viridis mRNA, clone: KALE-067K01, 5' end sequence.
DK481398.1:73-92
CACTCGACGGAGTCTCCAACGCCTTCTCTC73AGATCTCCCACGATGCAGAGCTCCGCCGTGTTCTCCCTCTCTCCCTCGCT
Brassica oleracea var. viridis mRNA, clone: KALE-074J19, 5' end sequence.
DK484077.1:88-107
CACTCGACGGAGTCTCCAACGCCTTCTCTC88AGATCTCCCACGATGCAGAGCTCCGCCGTGTTCTCCCTCTCTCCCTCGCT
Brassica oleracea var. viridis mRNA, clone: KALE-085P15, 5' end sequence.
DK488425.1:75-94
CACTCGACGGAGTCTCCAACGCCTTCTCTC75AGATCTCCCACGATGCAGAGCTCCGCCGTGTTCTCCCTCTCTCCCTCGCT
Brassica oleracea var. viridis mRNA, clone: KALE-089K03, 5' end sequence.
DK489824.1:73-92
CACTCGACGGAGTCTCCAACGCCTTCTCTC73AGATCTCCCACGATGCAGAGCTCCGCCGTGTTCTCCCTCTCTCCCTCGCT
Brassica oleracea var. viridis mRNA, clone: KALE-090P22, 5' end sequence.
DK490347.1:75-94
CACTCGACGGAGTCTCCAACGCCTTCTCTC75AGATCTCCCACGATGCAGAGCTCCGCCGTGTTCTCCCTCTCTCCCTCGCT
Brassica oleracea var. viridis mRNA, clone: KALE-094J01, 5' end sequence.
DK491715.1:75-94
CACTCGACGGAGTCTCCAACGCCTTCTCTC75AGATCTCCCACGATGCAGAGCTCCGCCGTGTTCTCCCTCTCTCCCTCGCT
Brassica oleracea var. viridis mRNA, clone: KALE-102M02, 5' end sequence.
DK494851.1:75-94
CACTCGACGGAGTCTCCAACGCCTTCTCTC75AGATCTCCCACGATGCAGAGCTCCGCCGTGTTCTCCCTCTCTCCCTCGCT
Brassica oleracea var. viridis mRNA, clone: KALE-126G19, 5' end sequence.
DK503897.1:86-105
CACTCGACGGAGTCTCCAACGCCTTCTCTC86AGATCTCCCACGATGCAGAGCTCCGCCGTGTTCTCCCTCTCTCCCTCGCT
Brassica oleracea var. viridis mRNA, clone: KALE-131J19, 5' end sequence.
DK505883.1:83-102
CACTCGACGGAGTCTCCAACGCCTTCTCTC83AGATCTCCCACGATGCAGAGCTCCGCCGTGTTCTCCCTCTCTCCCTCGCT
Brassica oleracea var. viridis mRNA, clone: KALE-135I12, 5' end sequence.
DK507382.1:75-94
CACTCGACGGAGTCTCCAACGCCTTCTCTC75AGATCTCCCACGATGCAGAGCTCCGCCGTGTTCTCCCTCTCTCCCTCGCT
Brassica oleracea var. viridis mRNA, clone: KALE-136A22, 5' end sequence.
DK507582.1:83-102
CACTCGACGGAGTCTCCAACGCCTTCTCTC83AGATCTCCCACGATGCAGAGCTCCGCCGTGTTCTCCCTCTCTCCCTCGCT
Brassica oleracea var. viridis mRNA, clone: KALE-139E05, 5' end sequence.
DK508807.1:79-98
CACTCGACGGAGTCTCCAACGCCTTCTCTC79AGATCTCCCACGATGCAGAGCTCCGCCGTGTTCTCCCTCTCTCCCTCGCT
Brassica oleracea var. viridis mRNA, clone: KALE-154C17, 5' end sequence.
DK514496.1:88-107
CACTCGACGGAGTCTCCAACGCCTTCTCTC88AGATCTCCCACGATGCAGAGCTCCGCCGTGTTCTCCCTCTCTCCCTCGCT
Brassica oleracea var. viridis mRNA, clone: KALE-155C05, 5' end sequence.
DK514868.1:88-107
CACTCGACGGAGTCTCCAACGCCTTCTCTC88AGATCTCCCACGATGCAGAGCTCCGCCGTGTTCTCCCTCTCTCCCTCGCT
54ACDHPE_UP_026_F07_11NOV2004_053 Brassica napus DH12075 PEG Brassica napus cDNA 5', mRNA sequence.
DY003391.1:213-232
CACTCGACGGAGTCTCCAACGCCTTCTCTC213AGATCTCCCACGATGCAGAGCTCCGCCGTCTTCTCCCTCTCTCCCTCCCT
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_1795.
FX699115.1:230-249
CACTCGACGGAGTCTCCAACGCCTTCTCTC230AGATCTCCCACGATGCAGAGCTCCGCCGTCTTCTCCCTCTCTCCCTCGCT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_2865.
FX740667.1:230-249
CACTCGACGGAGTCTCCAACGCCTTCTCTC230AGATCTCCCACGATGCAGAGCTCCGCCGTCTTCTCCCTCTCTCCCTCGCT
TSA: Raphanus sativus RS02352 mRNA sequence.
JT786899.1:8-27
CTCACTC8AGATCTCCCACGATGCAGAGCTCCGCCTCCCCACTCTTCTCTTCTTTTGA
Sorghum bicolor cultivar Hongyingzi chromosome 4.
CP137828.1:12272783-12272802
ATGGTTTAGATTCATCCTTTAGGTCGGTGG12272783AGATCTCCCACGATGCAGAGTCCTGATTGGCCTCAAGAGGTGGGCGGGCG
Sorghum bicolor cultivar Huandiaonuo chromosome 4.
CP137838.1:12250765-12250784
ATGGTTTAGATTCATCCTTTAGGTCGGTGG12250765AGATCTCCCACGATGCAGAGTCCTGATTGGCCTCAAGAGGTGGGCGGGCG
Brassica napus plastid phosphoenolpyruvate/phosphate translocator mRNA, complete cds; nuclear gene for plastid product.
DQ985809.1:1-20
1AGATCTCCCACGATGCAGAGCTCCGCCGTCTTCTCCCTCTCTCCCTCGCT
Brassica napus plastid phosphoenolpyruvate/phosphate translocator (PPT1) gene, complete cds; nuclear gene for plastid product.
EU665688.1:1-20
1AGATCTCCCACGATGCAGAGCTCCGCCGTCTTCTCCCTCTCTCCCTCGCT
Brassica napus genome assembly, chromosome: A08.
HG994362.1:11889103-11889122
CACTCGACGGAGTCTCCAACGCCTTCTCTC11889103AGATCTCCCACGATGCAGAGCTCCGCCGTCTTCTCCCTCTCTCCCTCGCT
Brassica rapa genome, scaffold: A08.
LR031575.1:10893974-10893993
CACTCGACGGAGTCTCCAACGCCTTCTCTC10893974AGATCTCCCACGATGCAGAGCTCCGCCGTCTTCTCCCTCTCTCCCTCGCT
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:17750157-17750176
CACTCGACGGAGTCTCCAACGCCTTCTCTC17750157AGATCTCCCACGATGCAGAGCTCCGCCGTGTTCTCCCTCTCTCCCTCGCT
Raphanus sativus genome assembly, chromosome: 9.
LR778318.1:13649707-13649726
GAACTCACGCCTTCCCCAAACATCTCACTC13649707AGATCTCCCACGATGCAGAGCTCCGCCGTCTTCTCCCTCTCTCCCTCCCT
Brassica rapa genome assembly, chromosome: A08.
LS974624.2:16702570-16702589
CACTCGACGGAGTCTCCAACGCCTTCTCTC16702570AGATCTCCCACGATGCAGAGCTCCGCCGTCTTCTCCCTCTCTCCCTCGCT
Brassica oleracea var. botrytis non-green plastid phosphate/triose-phosphate translocator TPT precursor (BONGTPT) mRNA, complete cds.
U13632.1:2-21
C2AGATCTCCCACGATGCAGAGCTCCGCCGTCTTCTCCGCCTCTCCCTCCCT
Dioctria rufipes genome assembly, chromosome: 2.
OZ002741.1:87175032-87175051
TCAGGAAAACTTTACTTACACTCGTCGAAT87175032AGATCTCCCACGATGCAGAGGAATCTTCCAATTTTCCGTCATCTAAAATT
Dioctria rufipes genome assembly, chromosome: 2.
OZ002741.1:89047265-89047284
TCAGGAAAACTTTACTTACACTCGTCGAAT89047265AGATCTCCCACGATGCAGAGGAATCTTCCAATTTTCCGTCATCTAAAATT
Dioctria rufipes genome assembly, chromosome: 2.
OZ002741.1:92796133-92796152
TCAGGAAAACTTTACTTACACTCGTCGAAT92796133AGATCTCCCACGATGCAGAGGAATTTTCCAATTTTCCGTCATCTAAAATT
Dioctria rufipes genome assembly, chromosome: 2.
OZ002741.1:95641189-95641208
TCATGAAAACTTTACTTACACTCGTCGAAT95641189AGATCTCCCACGATGCAGAGGAATCTTCCAATTTTCCGTCATCTAAAATT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTCTGCATCGTGGGAGATCT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTCTGCATCGTGGGAGATCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.138 | 0.130 | search_plus_done; http://172.18.8.135:50400/match?q=CTCTGCATCGTGGGAGATCT&k=0&no_gap=0&offset=0&limit=50
1.414 | 1.276 | search_minus_done; http://172.18.8.135:50400/match?q=AGATCTCCCACGATGCAGAG&k=0&no_gap=0&offset=0&limit=37
1.451 | 0.036 | cgi_end;

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