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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-18 11:31:32, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Candidatus Latescibacteria bacterium isolate cdc6522c-bbe9-4fa3-a52d-301d393956c9 genome assembly, chromosome: 2.
OY763182.1:305517-305536
GACACGCCGGCATGGCATGCCTCTGAATTC305517CTCTGCCATTTCACAAGCCTCCAATGGTGAATGGTTTCGATCATCGCAAA
USDA-FP_119000-603 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_A07 5', mRNA sequence.
CF504115.1:370-389
TGGCATCAAAACCGTTAACTTCTCTGTTTT370CTCTGCCATTTCACAAGCCTATCTCGTGGTCCCCGCCAGGA
USDA-FP_120000-309 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-22_A12 5', mRNA sequence.
CF504818.1:479-498
TGGCATCAAAACCGTTAACTTCTCTGTTTT479CTCTGCCATTTCACAAGCCTATCTCGTGGTCCCCGCCAGGAAA
USDA-FP_122000-957 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-57_G04 5', mRNA sequence.
CF507456.1:470-489
TGGCATCAAAACCGTTAACTTCTCTGTTTT470CTCTGCCATTTCACAAGCCTATCTCGTGGTCCCCGCCAGGAAACTCAACA
USDA-FP_125000-310 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-81_E12 5', mRNA sequence.
CF509802.1:264-283
TGGCATCAAAACCGTTAACTTCTCTGTTTT264CTCTGCCATTTCACAAGCCTATCTCGTGGTCCCCGCCAGGAAACTCAACA
UCRCS02_01M13_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M13, mRNA sequence.
CF832389.1:489-508
TGGCATCAAAACCGTTAACTTCTCTGTTTT489CTCTGCCATTTCACAAGCCTATCTCGTGGTCCCCGCCAGGAAACTCAACA
CGF1004531_C12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_C12 5', mRNA sequence.
CK932639.1:510-529
TGGCATCAAAACCGTTAACTTCTCTGTTTT510CTCTGCCATTTCACAAGCCTATCTCGTGGTCCCCGCCAGGAAACTCAACA
CGF1004287_F03 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIF_F03 5', mRNA sequence.
CK933271.1:514-533
TGGCATCAAAACCGTTAACTTCTCTGTTTT514CTCTGCCATTTCACAAGCCTATCTCGTGGTCCCCGCCAGGAAACTCAACA
CGF1004286_C09 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IF_C09 5', mRNA sequence.
CK933384.1:532-551
TGGCATCAAAACAGTTAACTTCTCTGTTTT532CTCTGCCATTTCACAAGCCTATCTCGTGGTCCCCGCCAGGAAACTCAACA
CGF1004285_E04 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0003_IVF_E04 5', mRNA sequence.
CK933439.1:241-260
TGGCATCAAAACCGTTAACTTCTCTGTTTT241CTCTGCCATTTCACAAGCCTATCTCGTGGTCCCCGCCAGGAAACTCAACA
UCRCS04_2_029C08_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_029_T3_C08, mRNA sequence.
CV887123.1:487-506
TGGCATCAAAACCGTTAACTTCTCTGTTTT487CTCTGCCATTTCACAAGCCTATCTCGTGGTCCCCGCCAGGAAACTCAACA
UCRCS09_26A03_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-26A03-B5-1-4.b, mRNA sequence.
CX049173.1:490-509
TGGCATCAAAACCGTTAACTTCTCTGTTTT490CTCTGCCATTTCACAAGCCTATCTCGTGGTCCCCGCCAGGAAACTCAACA
s13dNF45D02AT026_515712 Aphid-Infected Shoots Medicago truncatula cDNA, mRNA sequence.
CX527600.1:488-507
CACTTTCGGTATTGGCGAGGATTTGGTTGT488CTCTGCCATTTCACAAGCCTTTGGTTGAGTTTGTTAATAGGTTTCAGCCG
Citrus unshiu mRNA, clone: MWYBU54, 5'-end sequence, expressed in whole fruit.
DC894778.1:266-285
TGGCATCAAAACAGTTAACTTCTCTGTTTT266CTCTGCCATTTCACAAGCCTATCTCGTGGTCCCCGCCAGGAAACTCAACA
Citrus unshiu mRNA, clone: MWYEE31, 5'-end sequence, expressed in whole fruit.
DC894854.1:478-497
TGGCATCAAAACAGTTAACTTCTCTGTTTT478CTCTGCCATTTCACAAGCCTATCTCGTGGTCCCCGCCAGGAAACTCAACA
Citrus unshiu mRNA, clone: MWYEK59, 5'-end sequence, expressed in whole fruit.
DC894989.1:516-535
TGGCATCAAAACAGTTAACTTCTCTGTTTT516CTCTGCCATTTCACAAGCCTATCTCGTGGTCCCCGCCAGGAAACTCAACA
Citrus unshiu mRNA, clone: MWYFM25, 5'-end sequence, expressed in whole fruit.
DC895408.1:516-535
TGGCATCAAAACAGTTAACTTCTCTGTTTT516CTCTGCCATTTCACAAGCCTATCTCGTGGTCCCCGCCAGGAAACTCAACA
IC0AAA10DF02RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY263132.1:488-507
TGGCATCAAAACCGTTAACTTCTCTGTTTT488CTCTGCCATTTCACAAGCCTATCTCGTGGTCCCCGCCAGGAAACTCAACA
IC0AAA21AD02RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY267300.1:234-253
TGGCATCAAAACAGTTAACTTCTCTGTTTT234CTCTGCCATTTCACAAGCCTATCTCGTGGTTCCCGCCAGGAAACTCAACA
IC0AAA28DD06RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY270113.1:506-525
TGGCATCAAAACAGTTAACTTCTCTGTTTT506CTCTGCCATTTCACAAGCCTATCTCGTGGTTCCCGCCAGGAAACTCAACA
IC0AAA71AC05RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY288956.1:459-478
TGGCATCAAAACAGTTAACTTCTCTGTTTT459CTCTGCCATTTCACAAGCCTATCTCGTGGTTCCCGCCAGGAAACTCAACA
KN0AAH1AC08RM2 PhII-III-Vesicles1 Citrus clementina cDNA 5', mRNA sequence.
DY304896.1:502-521
TGGCATCAAAACAGTTAACTTCTCTGTTTT502CTCTGCCATTTCACAAGCCTATCTCGTGGTTCCCGCCAGGAAACTCAACA
KN0AAH1CH02RM2 PhII-III-Vesicles1 Citrus clementina cDNA 5', mRNA sequence.
DY304986.1:502-521
TGGCATCAAAACAGTTAACTTCTCTGTTTT502CTCTGCCATTTCACAAGCCTATCTCGTGGTTCCCGCCAGGAAACTCAACA
KN0AAH2AB10RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5', mRNA sequence.
DY305038.1:502-521
TGGCATCAAAACAGTTAACTTCTCTGTTTT502CTCTGCCATTTCACAAGCCTATCTCGTGGTTCCCGCCAGGAAACTCAACA
KN0AAH2AD04RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5', mRNA sequence.
DY305048.1:502-521
TGGCATCAAAACAGTTAACTTCTCTGTTTT502CTCTGCCATTTCACAAGCCTATCTCGTGGTTCCCGCCAGGAAACTCAACA
KN0AAH2AD06RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5', mRNA sequence.
DY305049.1:502-521
TGGCATCAAAACAGTTAACTTCTCTGTTTT502CTCTGCCATTTCACAAGCCTATCTCGTGGTTCCCGCCAGGAAACTCAACA
KN0AAH2AF04RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5', mRNA sequence.
DY305058.1:502-521
TGGCATCAAAACAGTTAACTTCTCTGTTTT502CTCTGCCATTTCACAAGCCTATCTCGTGGTTCCCGCCAGGAAACTCAACA
KN0AAH2CA06RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5', mRNA sequence.
DY305118.1:502-521
TGGCATCAAAACAGTTAACTTCTCTGTTTT502CTCTGCCATTTCACAAGCCTATCTCGTGGTTCCCGCCAGGAAACTCAACA
KN0AAH2CA12RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5', mRNA sequence.
DY305122.1:502-521
TGGCATCAAAACAGTTAACTTCTCTGTTTT502CTCTGCCATTTCACAAGCCTATCTCGTGGTTCCCGCCAGGAAACTCAACA
KN0AAH2CD05RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5', mRNA sequence.
DY305138.1:502-521
TGGCATCAAAACAGTTAACTTCTCTGTTTT502CTCTGCCATTTCACAAGCCTATCTCGTGGTTCCCGCCAGGAAACTCAACA
KN0AAH3AG06RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5', mRNA sequence.
DY305270.1:502-521
TGGCATCAAAACAGTTAACTTCTCTGTTTT502CTCTGCCATTTCACAAGCCTATCTCGTGGTTCCCGCCAGGAAACTCAACA
KN0AAH3DD07RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5', mRNA sequence.
DY305412.1:502-521
TGGCATCAAAACAGTTAACTTCTCTGTTTT502CTCTGCCATTTCACAAGCCTATCTCGTGGTTCCCGCCAGGAAACTCAACA
CS00-C1-100-018-C04-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
EY651101.1:521-540
TGGCATCAAAACCGTTAACTTCTCTGTTTT521CTCTGCCATTTCACAAGCCTATCTCGTGGTCCCCGCCAGGAAACTCAACA
CS00-C3-700-024-F12-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
EY694363.1:515-534
TGGCATCAAAACAGTTAACTTCTCTGTTTT515CTCTGCCATTTCACAAGCCTATCTCGTGGTCCCCGCCAGGAAACTCAACA
CS00-C3-700-049-A03-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
EY696573.1:514-533
TGGCATCAAAACCGTTAACTTCTCTGTTTT514CTCTGCCATTTCACAAGCCTATCTCGTGGTCCCCGCCAGGAAACTCAACA
CS00-C3-700-094-D03-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
EY700418.1:512-531
TGGCATCAAAACAGTTAACTTCTCTGTTTT512CTCTGCCATTTCACAAGCCTATCTCGTGGTCCCCGCCAGGAAACTCAACA
CS00-C3-700-103-D05-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
EY701123.1:519-538
TGGCATCAAAACAGTTAACTTCTCTGTTTT519CTCTGCCATTTCACAAGCCTATCTCGTGGTCCCCGCCAGGAAACTCAACA
CS00-C3-702-058-C02-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
EY715752.1:184-203
TGGCATCAAAACCGTTAACTTCTCTGTTTT184CTCTGCCATTTCACAAGCCTATCTCGTGGTCCCCGCCAGGAAACTCAACA
CR05-C3-700-045-B11-CT.F Mandarin fruit, development stadium (1 of 3) Citrus reticulata cDNA, mRNA sequence.
EY783840.1:300-319
TGGCATCAAAACCGTTAACTTCTCTGTTTT300CTCTGCCATTTCACAAGCCTATCTCGTGGTCCCCGCCAGGAAACTCAACA
CR05-C3-700-054-E07-CT.F Mandarin fruit, development stadium (1 of 3) Citrus reticulata cDNA, mRNA sequence.
EY784610.1:504-523
TGGCATCAAAACCGTTAACTTCTCTGTTTT504CTCTGCCATTTCACAAGCCTATCTCGTGGTCCCCGCCAGGAAACTCAACA
CR05-C3-700-069-G11-CT.F Mandarin fruit, development stadium (1 of 3) Citrus reticulata cDNA, mRNA sequence.
EY785844.1:499-518
TGGCATCAAAACCGTTAACTTCTCTGTTTT499CTCTGCCATTTCACAAGCCTATCTCGTGGTCCCCGCCAGGAAACTCAACA
CR05-C3-700-079-F12-CT.F Mandarin fruit, development stadium (1 of 3) Citrus reticulata cDNA, mRNA sequence.
EY786989.1:504-523
TGGCATCAAAACCGTTAACTTCTCTGTTTT504CTCTGCCATTTCACAAGCCTATCTCGTGGTCCCCCGCCAGGAAACTCAAC
CR05-C3-700-088-D03-CT.F Mandarin fruit, development stadium (1 of 3) Citrus reticulata cDNA, mRNA sequence.
EY787285.1:517-536
TGGCATCAAAACAGTTAACTTCTCTGTTTT517CTCTGCCATTTCACAAGCCTATCTCGTGGTCCCCGCCAGGAAACTCAACA
CR05-C3-700-138-E10-CT.F Mandarin fruit, development stadium (1 of 3) Citrus reticulata cDNA, mRNA sequence.
EY792095.1:481-500
TGGCATCAAAACCGTTAACTTCTCTGTTTT481CTCTGCCATTTCACAAGCCTAATCTCGTGGTCCCCCGCACAAAGAAACAC
CR05-C3-700-140-A08-CT.F Mandarin fruit, development stadium (1 of 3) Citrus reticulata cDNA, mRNA sequence.
EY792226.1:483-502
TGGCATCAAAACCGTTAACTTCTCTGTTTT483CTCTGCCATTTCACAAGCCTATCTCGTGGTCCCCGCCAGGAAACTCAACA
CR05-C3-700-143-D09-CT.F Mandarin fruit, development stadium (1 of 3) Citrus reticulata cDNA, mRNA sequence.
EY792515.1:468-487
TGGCATCAAAACCGTTAACTTCTCTGTTTT468CTCTGCCATTTCACAAGCCTATCTCGTGGTCCCCGCCAGGAAACTCAACA
CR05-C3-701-019-G10-CT.F Mandarin fruit, development stadium (2 of 3) Citrus reticulata cDNA, mRNA sequence.
EY794511.1:474-493
TGGCATCAAAACCGTTAACTTCTCTGTTTT474CTCTGCCATTTCACAAGCCTATCTCGTGGTCCCCGCCAGGAAACTCAACA
CR05-C3-701-102-A08-CT.F Mandarin fruit, development stadium (2 of 3) Citrus reticulata cDNA, mRNA sequence.
EY801657.1:526-545
TGGCATCAAAACCGTTAACTTCTCTGTTTT526CTCTGCCATTTCACAAGCCTATCTCGTGGTCCCCGCCAGGAAACTCAACA
CG32-C1-003-088-A03-CT.F Mexican lime leaf, greenhouse plant Citrus aurantiifolia cDNA, mRNA sequence.
EY858823.1:490-509
TGGCATCAAAACAGTTAACTTCTCTGTTTT490CTCTGCCATTTCACAAGCCTATCTCGTGGTCCCCGCCAGGAAACTCAACA
LT33-C1-003-057-E12-CT.F Tahiti lime leaf, greenhouse plant Citrus latifolia cDNA, mRNA sequence.
EY881600.1:67-86
TGGCATCAAAACAGTTAACTTCTCTGTTTT67CTCTGCCATTTCACAAGCCTATCTCGTGGTCCCCGCCACGAAACTCAACA
IC0AAA10DF02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA10DF02, mRNA sequence.
FC887005.1:488-507
TGGCATCAAAACCGTTAACTTCTCTGTTTT488CTCTGCCATTTCACAAGCCTATCTCGTGGTCCCCGCCAGGAAACTCAACA
MBEAS94TF mth2 Medicago truncatula genomic clone 15P19, genomic survey sequence.
CG940981.1:331-350
CACTTTCGGTATTGGCGAGGATTTGGTTGT331CTCTGCCATTTCACAAGCCTTTGGTTGAGTTTGTTAATAGGTTTCAGCCG
MBELM89TR mth2 Medicago truncatula genomic clone 81O9, genomic survey sequence.
CG973673.1:334-353
CACTTTCGGTATTGGCGAGGATTTGGTTGT334CTCTGCCATTTCACAAGCCTTTGGTTGAGTTTGTTAATAGGTTTCAGCCG
MBEEL02TRB mth2 Medicago truncatula genomic clone 38B4, genomic survey sequence.
CG974049.1:334-353
CACTTTCGGTATTGGCGAGGATTTGGTTGT334CTCTGCCATTTCACAAGCCTTTGGTTGAGTTTGTTAATAGGTTTCAGCCG
mth2-159I18FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula.
CR488981.1:339-358
CACTTTCGGTATTGGCGAGGATTTGGTTGT339CTCTGCCATTTCACAAGCCTTTGGTTGAGTTTGTTAATAGGTTTCAGCCG
Citrus sinensis 1,6 rhamnosyltransferase mRNA, complete cds.
DQ119035.1:477-496
TGGCATCAAAACCGTTAACTTCTCTGTTTT477CTCTGCCATTTCACAAGCCTATCTCGTGGTCCCCGCCAGGAAACTCAACA
Medicago arabica genome assembly, chromosome: 8.
OX326971.1:55794482-55794501
CGCTTTCAGTATTGGCGAGGATTTGGTTGT55794482CTCTGCCATTTCACAAGCCTTTGGTTGAGTTTGTTGATAGGTTTCAGCCG
Medicago lupulina genome assembly, chromosome: 1.
OY283139.1:88972909-88972928
CGCTTTCGGTATTGGCGAGGATTTGGTTGT88972909CTCTGCCATTTCACAAGCCTTTGGTTGAGTTTGTTGATAGGTTTCAGCTG
Hordeum bulbosum genome assembly, chromosome: 6H_4.
OY737486.1:391441871-391441890
CATCAAGTTCCATGTGTTTTCAAAGACAAC391441871CTCTGCCATTTCACAAGCCTTGTCACCCATCCTGGGTGCAAAGATGAGCA
Hordeum bulbosum genome assembly, chromosome: 6H_1.
OY737523.1:387652304-387652323
CATCAAGTTCCATGTGTTTTCAAAGACAGC387652304CTCTGCCATTTCACAAGCCTTGTCACCCATCCTGGGTGCAAAGATGAGCA
Citrus sinensis genome assembly, chromosome: 6.
OY754323.1:18252641-18252660
TGGCATCAAAACAGTTAACTTCTCTGTTTT18252641CTCTGCCATTTCACAAGCCTATCTCGTGGTCCCCGCCAGGAAACTCAACA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTCTGCCATTTCACAAGCCT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTCTGCCATTTCACAAGCCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
2.496 | 2.487 | search_plus_done; http://172.18.8.135:50400/match?q=CTCTGCCATTTCACAAGCCT&k=0&no_gap=0&offset=0&limit=50
2.571 | 0.075 | search_minus_done; http://172.18.8.135:50400/match?q=AGGCTTGTGAAATGGCAGAG&k=0&no_gap=0&offset=0&limit=0
2.571 | 0.000 | cgi_end;

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