GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 03:07:50, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Dianthus superbus Ds_CL5771Contig1 mRNA sequence.
JL386793.1:348-367
ACGTCGCTCATCAAGACGACGACGACGCTC348CTCTTTGCGCAGCTTCTTCT
Leptosphaeria biglobosa Thlaspii ibcn65_scaffold00063 complete sequence.
FO905838.1:62214-62233
TGTACAACAAGAAGTCCGCAATGCCGGCTC62214CTCTTTGCGCAGCTTCTTCTCCAAATTTGCAGCGCCTCCGCCCCCAGCTG
Bellardia pandia genome assembly, chromosome: 2.
OU696530.1:100593778-100593797
CAAGTTATTATGTTTCTGCCATTGCTTTTG100593778CTCTTTGCGCAGCTTCTTCTCGCGGGTTAAACGTGTTATGGTCTCAAGGC
Dryomyza anilis genome assembly, chromosome: 4.
OX638133.1:85294038-85294057
CTCGTTTTCGAGCTGCTGCTTGAGTTTTTG85294038CTCTTTGCGCAGCTTCTTCTGCAGTTCATCGAGCATTTTGCGTGTATCAT
Dianthus caryophyllus mRNA, clone: CES04N06, 5' end sequence.
FY383918.1:281-300
GGAAGGAAGCTAAGAGGCGAAAGAAAGAGG281AGAAGAAGCTGCGCAAAGAGGAGCGTCGTCGTCGTCGTGATGAGCGACGT
TSA: Dianthus caryophyllus mRNA, contig: CAK09.316.C2.
FX297102.1:427-446
GGAAGGAAGCTAAGAGGCGAAAGAAAGAGG427AGAAGAAGCTGCGCAAAGAGGAGCGTCGTCGTCGTCGTGATGAGCGACGT
TSA: Solenopsis invicta mRNA, contig: comp74054_c2_seq1.
LJ471669.1:2486-2505
AATTAAACGCATCCAAATCGAAGCTTTCGA2486AGAAGAAGCTGCGCAAAGAGGAGAAGAAGCAGGAGGCACAAGCATCGAAT
TSA: Solenopsis invicta mRNA, contig: comp74054_c2_seq2.
LJ471670.1:2573-2592
AATTAAACGCATCCAAATCGAAGCTTTCGA2573AGAAGAAGCTGCGCAAAGAGGAGAAGAAGCAGGAGGCACAAGCATCGAAT
TSA: Solenopsis invicta mRNA, contig: comp74054_c2_seq4.
LJ471672.1:2573-2592
AATTAAACGCATCCAAATCGAAGCTTTCGA2573AGAAGAAGCTGCGCAAAGAGGAGAAGAAGCAGGAGGCACAAGCATCGAAT
TSA: Solenopsis invicta mRNA, contig: comp74054_c2_seq5.
LJ471673.1:2573-2592
AATTAAACGCATCCAAATCGAAGCTTTCGA2573AGAAGAAGCTGCGCAAAGAGGAGAAGAAGCAGGAGGCACAAGCATCGAAT
TSA: Solenopsis invicta mRNA, contig: comp74054_c2_seq6.
LJ471674.1:2573-2592
AATTAAACGCATCCAAATCGAAGCTTTCGA2573AGAAGAAGCTGCGCAAAGAGGAGAAGAAGCAGGAGGCACAAGCATCGAAT
TSA: Solenopsis invicta mRNA, contig: comp74054_c2_seq7.
LJ471675.1:2486-2505
AATTAAACGCATCCAAATCGAAGCTTTCGA2486AGAAGAAGCTGCGCAAAGAGGAGAAGAAGCAGGAGGCACAAGCATCGAAT
TSA: Solenopsis invicta mRNA, contig: comp74054_c2_seq8.
LJ471676.1:2486-2505
AATTAAACGCATCCAAATCGAAGCTTTCGA2486AGAAGAAGCTGCGCAAAGAGGAGAAGAAGCAGGAGGCACAAGCATCGAAT
TSA: Solenopsis invicta mRNA, contig: comp74054_c2_seq9.
LJ471677.1:2486-2505
AATTAAACGCATCCAAATCGAAGCTTTCGA2486AGAAGAAGCTGCGCAAAGAGGAGAAGAAGCAGGAGGCACAAGCATCGAAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTCTTTGCGCAGCTTCTTCT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTCTTTGCGCAGCTTCTTCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.116 | 0.107 | search_plus_done; http://172.18.8.135:50400/match?q=CTCTTTGCGCAGCTTCTTCT&k=0&no_gap=0&offset=0&limit=50
0.391 | 0.275 | search_minus_done; http://172.18.8.135:50400/match?q=AGAAGAAGCTGCGCAAAGAG&k=0&no_gap=0&offset=0&limit=46
0.397 | 0.007 | cgi_end;

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