GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 02:18:12, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Dianthus superbus Ds_CL2850Contig1 mRNA sequence.
JL391379.1:506-525
AGGACGAGCTGGTAGTTCACCGCCCAAAAG506CTGCTCTTTCTCGCGTCTCTTCTTCTCCTCGACTTCGAGCTTCTTTTTGG
Penicillium oxalicum strain CCTCC M 20211309 chromosome IV.
CP088338.1:1476058-1476077
AAATTAGTTGTCAGTAGCGGCTCTGGTCCC1476058CTGCTCTTTCTCGCGTCTCTTGGCTTCTTCCCTCAAGCGGCGTTCTTCTC
Penicillium oxalicum strain I1R1 chromosome IV.
CP093056.1:1496435-1496454
AAATTAGTTGTCAGTAGCGGCTCTGGTCCC1496435CTGCTCTTTCTCGCGTCTCTTGGCTTCTTCCCTCAAGCGGCGTTCTTCTC
Dianthus caryophyllus mRNA, clone: CES04F23, 5' end sequence.
FY383745.1:320-339
GCCAAAAAGAGCTCGAAGTCGAGGAGAAGA320AGAGACGCGAGAAAGAGCAGCTTTTGGGCGGTGAACTACCTGCTCGTCCT
Dianthus caryophyllus mRNA, clone: CES08E01, 5' end sequence.
FY385220.1:366-385
GCCAAAAAGAGCTCGAAGTCGAGGAGAAGA366AGAGACGCGAGAAAGAGCAGCTTTTGGGCGGTGAACTACCTGCTCGTCCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTGCTCTTTCTCGCGTCTCT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTGCTCTTTCTCGCGTCTCT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.113 | 0.105 | search_plus_done; http://172.18.8.135:50400/match?q=CTGCTCTTTCTCGCGTCTCT&k=0&no_gap=0&offset=0&limit=50
0.329 | 0.216 | search_minus_done; http://172.18.8.135:50400/match?q=AGAGACGCGAGAAAGAGCAG&k=0&no_gap=0&offset=0&limit=47
0.330 | 0.001 | cgi_end;

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