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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-18 09:15:35, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

17ACDHMS_UP_003_G03_28JAN2004_019 Brassica napus 17ACDHMS Brassica napus cDNA 5', mRNA sequence.
CN725921.1:200-219
CCTGCCTCCAATCCTTACAACTTAAGCTCA200CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
SS0756.txt NaCl treated Chinese cabbage seedling library Brassica rapa subsp. pekinensis cDNA clone SS0756.txt 5', mRNA sequence.
CV544975.1:279-298
CCTGCCTCCAATCCTTACAACCTAAGCTTG279CTGTCTCTACATTGCTGCTGCCGTAGCTTTGAATAAATTGAGTGTCTCTC
82-E024498-021-024-C21-frev ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022C2124Q, mRNA sequence.
CX188763.1:643-662
CCTGCCTCCGATCCTTACAACTTAAGCTCA643CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
74-E019393-021-011-C19-T7R ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022C1911Q, mRNA sequence.
CX189632.1:29-48
TGCCTCCAATCCTTACAACTTAAGCTCA29CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
Brassica oleracea var. viridis mRNA, clone: KALE-003O12, 3' end sequence.
DK516683.1:595-614
CCTGCCTCCAATCCTTACAACTTAAGCTCA595CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
Brassica oleracea var. viridis mRNA, clone: KALE-036F24, 3' end sequence.
DK529073.1:542-561
CCTGCCTCCAATCCTTACAACTTAAGCTCA542CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
Brassica oleracea var. viridis mRNA, clone: KALE-037E06, 3' end sequence.
DK529414.1:637-656
CCTGCCTCCAATCCTTACAACTTAAGCTCA637CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
Brassica oleracea var. viridis mRNA, clone: KALE-074I03, 3' end sequence.
DK543632.1:585-604
CCTGCCTCCAATCCTTACAACTTAAGCTCA585CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
Brassica oleracea var. viridis mRNA, clone: KALE-108A17, 3' end sequence.
DK556451.1:544-563
CCTGCCTCCAATCCTTACAACTTAAGCTCA544CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
54ACDHPE_UP_027_B09_10NOV2004_077 Brassica napus DH12075 PEG Brassica napus cDNA 5', mRNA sequence.
DY003437.1:312-331
CCTGCCTCCAATCCTTACAACTTAAGCTCA312CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
21ACACMS_UP_029_C12_06NOV2004_092 Brassica napus 21ACACMS Brassica napus cDNA 5', mRNA sequence.
EE409536.1:228-247
CCTGCCTCCAATCCTTACAACTTAAGCTCA228CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
BNYS8DCT_UP_030_D10_21APR2005_074 Brassica napus seeds BNYS8DCT Brassica napus cDNA 5', mRNA sequence.
EE482768.1:614-633
CCTGCCTCCAATCCTTACAACTTAAGCTCA614CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
0162330 Brassica napus Flower Brassica napus cDNA, mRNA sequence.
EV130217.1:131-150
CCTGCCTCCAATCCTTACAACTTAAGCTCA131CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
0079026 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV155165.1:353-372
CCTGCCTCCAATCCTTACAACTTAAGCTCA353CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATGGGGGGGCCCGGTACC
0079378 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV155517.1:354-373
CCTGCCTCCAATCCTTACAACTTAAGCTCA354CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATGGGGGGGCCCGGTACC
0144409 Brassica napus Etiolated seedlings (Uni-ZAP) Brassica napus cDNA, mRNA sequence.
EV167599.1:671-690
CCTGCCTCCAATCCTTACAACTTAAGCTCA671CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
0144570 Brassica napus Etiolated seedlings (Uni-ZAP) Brassica napus cDNA, mRNA sequence.
EV167760.1:328-347
CCTGCCTCCAATCCTTACAACTTAAGCTCA328CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
0151151 Brassica napus Etiolated seedlings (Uni-ZAP) Brassica napus cDNA, mRNA sequence.
EV171005.1:529-548
CCTGCCTACAATCCTTACAACTTAAGCTCA529CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
0150023 Brassica napus Etiolated seedlings (pSPORT1) Brassica napus cDNA, mRNA sequence.
EV179443.1:377-396
CCTGCCTCCAATCCTTACAACTTAAGCTCA377CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
0151762 Brassica napus Etiolated seedlings (pSPORT1) Brassica napus cDNA, mRNA sequence.
EV180369.1:438-457
CCTGCCTCCAATCCTTACAACTTAAGCTCA438CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
BR036586 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-080C01 5', mRNA sequence.
EX051942.1:182-201
CCTGCCTCCAATCCTTACAACCTAAGCTTG182CTGTCTCTACATTGCTGCTGCCGTAGCTTTGAATAAATTGAGTGTCTCTC
BR067917 silique cDNA library KBSQ Brassica rapa subsp. pekinensis cDNA clone KBSQ-02D04 5', mRNA sequence.
EX083273.1:446-465
CCTGCCTCCAATCCTTACAACCTAAGCTTG446CTGTCTCTACATTGCTGCTGCCGTAGCTTTGAATAAATTGAGTGTCTCTC
BR106814 mature green leaf cDNA library KHLM Brassica rapa subsp. pekinensis cDNA clone KHLM-15F09 5', mRNA sequence.
EX122984.1:269-288
CCTGCCTCCAATCCTTACAACCTAAGCTTG269CTGTCTCTACATTGCTGCTGCCGTAGCTTTGAATAAATTGAGTGTCTCTC
BR108969 mature green leaf cDNA library KHLM Brassica rapa subsp. pekinensis cDNA clone KHLM-51C04 5', mRNA sequence.
EX125139.1:489-508
CCTGCCTCCAATCCTTACAACCTAAGCTTG489CTGTCTCTACATTGCTGCTGCCGTAGCTTTGAATAAATTGAGTGTCTCTC
RR2BY92TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EX755288.1:782-801
ACTACCTGCTCATCCTTACACCTAAGTTCA782CTGTCTCTACATTGCTGCTGCTGTAGCTTG
RS1BT44TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EX887417.1:507-526
CCTGCCTCCAATCCTTACAACCTAAGTTCA507CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTATATCTC
RS3BJ45TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
EX902340.1:260-279
CCTGCCTCCAATCCTTACAACCTAAGTTCA260CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTATATCTC
RR4EB20TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EY925195.1:164-183
CCTGCCTCCAATCCTTACAACCTAAGTTCA164CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
RS1E206TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EY932851.1:409-428
CCTGCCTCCAATCCTTACAACCTAAGTTCA409CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTATATCTC
RR4F786TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
FD558407.1:672-691
CCTGCCTCCAATCCTTACAACCTAAGTTCA672CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
RS1F245TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
FD562692.1:163-182
CCTGCCTCCAATCCTTACAACCTAAGTTCA163CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
RS1FR83TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
FD564804.1:605-624
CCTGCCTCCAATCCTTACAACCTAAGTTCA605CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
RS2FH40TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD570680.1:498-517
CCTGCCTCCAATCCTTACAACCTAAGTTCA498CTGTCTCTACATTGCTGCTGCAGTGGCTTTGAATAAATTGAGTGTCTCTC
RS2GL65TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD947322.1:443-462
CCTGCCTCCAATCCTTACAACCTAAGTTCA443CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTATATCTC
Brassica rapa subsp. pekinensis mRNA, clone:BBRAF08K01, 5'-end sequence.
FY066448.1:125-144
CCTGCCTCCAATCCTTACAACCTAAGCTTG125CTGTCTCTACATTGCTGCTGCCGTAGCTTTGAATAAATTGAGTGTCTCTC
Raphanus sativus mRNA, clone: RSCS17M07, 5' end sequence.
FY452066.1:685-704
CCTGCCTCCAATCCTTACAACCTAAGTTCA685CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTATATCTC
BNAOV1GH_T3_106_D03_22SEPT2007_025 BNAOV1GH Brassica napus cDNA 5', mRNA sequence.
GR445293.1:703-722
CCTGCCTCCAATCCTTACAACTTAAGCTCA703CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
0266101 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO923500.1:468-487
CCTGCCTCCAATCCTTACAACCTAAGCTTG468CTGTCTCTACATTGCTGCTGCCGTAGCTTTGAATAAATTGAGTGTCTCTC
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_3419.
FX693115.1:2330-2349
CCTGCCTCCAATCCTTACAACCTAAGCTTG2330CTGTCTCTACATTGCTGCTGCCGTAGCTTTGAATAAATTGAGTGTCTCTC
BOMKF33TF BO_2_3_KB Brassica oleracea genomic clone BOMKF33, genomic survey sequence.
BH737084.1:241-260
CCTGCCTCCCATCCTTACAACTTAAGCTCA241CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
odh22d12.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH927633.1:559-578
CCTGCCTCCAATCCTTACAACTTAAGCTCA559CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
KBrH134I02 genomic clone, KBrH (HindIII) BAC library Brassica rapa subsp. pekinensis.
CT022967.1:260-279
CCTGCCTCCAATCCTTACAACCTAAGCTTG260CTGTCTCTACATTGCTGCTGCCGTAGCTTTGAATAAATTGAGTGTCTCTC
Brassica oleracea phospholipase D2 (PLD2) mRNA, complete cds.
AF090444.1:2501-2520
CCTGCCTCCAATCCTTACAACTTAAGCTCA2501CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
Brassica oleracea var. capitata phospholipase D2 (PLD2) gene, complete cds.
AF113919.1:3594-3613
CCTGCCTCCAATCCTTACAACTTAAGCTCA3594CTGTCTCTACATTGCTGCTGC
Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:8445705-8445724
CCTGCCTCCAATCCTTACAACTTAAGCTCA8445705CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:4113886-4113905
CCTACCTCCAATCCTTACAACCTAAGTTCA4113886CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:4113886-4113905
CCTACCTCCAATCCTTACAACCTAAGTTCA4113886CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
Brassica oleracea var. capitata phospholipase D mRNA, complete cds.
U85482.1:2550-2569
CCTGCCTCCAATCCTTACAACTTAAGCTCA2550CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
Zelleria hepariella genome assembly, chromosome: 6.
OX439384.1:18243813-18243832
CGGCGGCGGCGGCGGCGGCGCGACACGCGG18243813CTGTCTCTACATTGCTGCTGCTACACATTCAATGTTCGAAAGATTTGCGA
Ceriagrion tenellum genome assembly, chromosome: 8.
OY720640.1:40700680-40700699
ATGAGAGTTCATTTATAGCATGATTATTTA40700680CTGTCTCTACATTGCTGCTGCGATGAGTCAATCTCAGTTCCTGCCCACAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTGTCTCTACATTGCTGCTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTGTCTCTACATTGCTGCTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
2.026 | 2.017 | search_plus_done; http://172.18.8.135:50400/match?q=CTGTCTCTACATTGCTGCTG&k=0&no_gap=0&offset=0&limit=50
2.077 | 0.051 | search_minus_done; http://172.18.8.135:50400/match?q=CAGCAGCAATGTAGAGACAG&k=0&no_gap=0&offset=0&limit=0
2.077 | 0.000 | cgi_end;

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