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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-17 23:41:45, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH042_10617m, 5' end sequence.
AB450718.1:125-147
AATTCTCTCCACTCGCTTCTGCCTTCTGGG125CTGTGGCTGCCTGTTCTAGTTTTTGGTTAATCCTCTCCGAAATATCATCTGCA
Pyrus pyrifolia mRNA, clone: NLE2_22_12, 5' end sequence, expressed in leaf.
HX768483.1:33-55
AATTCTCTCCACTCGCTTCTGCCTTCTGGG33CTGTGGCTGCCTGTTCTAGTTTTTGGTTAATCCTCTCCGAAATATCATCTGCA
Pyrus pyrifolia mRNA, clone: NLE2_22_17, 5' end sequence, expressed in leaf.
HX768486.1:33-55
AATTCTCTCCACTCGCTTCTGCCTTCTGGG33CTGTGGCTGCCTGTTCTAGTTTTTGGTTAATCCTCTCCGAAATATCATCTGCA
TSA: Pyrus pyrifolia mRNA, contig: contig_5247.
FX434112.1:47-69
AATTCTCTCCACTCGCTTCTGCCTTCTGGG47CTGTGGCTGCCTGTTCTAGTTTTTGGTTAATCCTCTCCGAAATATCATCTGCA
TSA: Pyrus x bretschneideri Unigene67834_XinShao mRNA sequence.
JR654658.1:50-72
AATTCTCTCCACTCGCTTCTGCCTTCTGGG50CTGTGGCTGCCTGTTCTAGTTTTTGGTTAATCCTCTCCGAAATATCATCTGCA
Pyrus communis genome assembly, chromosome: 6.
OY757073.1:17184861-17184883
AATTCTCTCCACTCGCTTCTGCTTTCTGGG17184861CTGTGGCTGCCTGTTCTAGTTTTTGGTTAATCCTCTCCGAAATATCATCTGCA
Pyrus communis genome assembly, chromosome: 6.
OY757073.1:17196093-17196115
AATTCTCTCCACTCGCTTCTGCCTTCTGGG17196093CTGTGGCTGCCTGTTCTAGTTTTTGGTTAATCCTCTCCGAAATATCATCTGCA
Malus hybrid cultivar cultivar SH6 chromosome 13.
CP143387.1:14675352-14675374
TGCAGATGAGATTTCGGAGAGGATTAACCA14675352AAAACTAGAACAGGCAGCCACAGCCCAGAAGGCAGAAGCGAGTGGAGGAGAAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTGTGGCTGCCTGTTCTAGTTTT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTGTGGCTGCCTGTTCTAGTTTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.290 | 0.281 | search_plus_done; http://172.18.8.135:50400/match?q=CTGTGGCTGCCTGTTCTAGTTTT&k=0&no_gap=0&offset=0&limit=50
0.311 | 0.021 | search_minus_done; http://172.18.8.135:50400/match?q=AAAACTAGAACAGGCAGCCACAG&k=0&no_gap=0&offset=0&limit=43
0.312 | 0.001 | cgi_end;

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