GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-20 16:46:43, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Bos taurus genome assembly, chromosome: 2.
LR962875.1:75000069-75000088
ACTCTTGCCTGACAAATTCATCTTTCAACA75000069CTTCAAACATATCATTCTGCTTTCTACTATCCTGTAGGGTTTCAGCTAAG
Ovis canadensis canadensis isolate 43U chromosome 2 sequence.
CP011887.1:176023989-176024008
CTTAGCTGAAACCCTACAGGATAGTAGAAA176023989GCAGAATGATATGTTTGAAGTGTTTAAAGATGAATTTGTCAGGCAAGAAT
Capricornis sumatraensis isolate serow.1 chromosome 3.
CP135628.1:107788548-107788567
CTTAGCTGAAACCCTACAGGATAGTAGAAA107788548GCAGAATGATATGTTTGAAGTGTTTAAAGATGAATTTGTCAGGCAAGAAT
Bos taurus genome assembly, chromosome: 2.
LR962750.1:63744499-63744518
CTTAGCTGAAACCCTACAGGATAGTAGAAA63744499GCAGAATGATATGTTTGAAGTGTTGAAAGATGAATTTGTCAGGCAAGAGT
Bos gaurus x Bos taurus genome assembly, chromosome: 2.
OX258956.1:65832996-65833015
CTTAGCTGAAACCCTACAGGATAGTAGAAA65832996GCAGAATGATATGTTTGAAGTGTTGAAAGATGAATTTGTCAGGCAAGAGT
Bos taurus strain mammals genome assembly, chromosome: 2.
OX344691.1:65677015-65677034
CTTAGCTGAAACCCTACAGGATAGTAGAAA65677015GCAGAATGATATGTTTGAAGTGTTGAAAGATGAATTTGTCAGGCAAGAGT
Bos taurus genome assembly, chromosome: Bta02.
OY997230.1:66302490-66302509
CTTAGCTGAAACCCTACAGGATAGTAGAAA66302490GCAGAATGATATGTTTGAAGTGTTGAAAGATGAATTTGTCAGGCAAGAGT
WS02710.C21_J17 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02710_J17 5, mRNA sequence.
DR522025.1:687-706
GTCTTTCAGCCGAGCCAAGGGTTCTGTTTG687GCAGAATGATATGTTTGAAGATAGCATGGAAGCCTTAGGCATGCAGATTG
TSA: Larix kaempferi PEMC13010.Lakaproemb mRNA sequence.
JR142728.1:92-111
GTCTTTCAGCCGAGCGAAGGGTTCTCTTTG92GCAGAATGATATGTTTGAAGATAGCATGGAAGCCTTTGGCATGCAGCTTG
TSA: Abies alba contig05139.Aaseedling mRNA sequence.
JV149756.1:193-212
GTCCTTCAGCCGAACGAAGGGTTCTCTTTG193GCAGAATGATATGTTTGAAGATAGCATGGAAGCATTTGGCATGCAGCTTG
Bos taurus clone CH240-135F3, WORKING DRAFT SEQUENCE, 18 unordered pieces.
AC164047.2:24436-24455
CTTAGCTGAAACCCTACAGGATAGTAGAAA24436GCAGAATGATATGTTTGAAGTGTTGAAAGATGAATTTGTCAGGCAAGAGT
Bos taurus clone CH240-235D17, WORKING DRAFT SEQUENCE, 4 unordered pieces.
AC170027.3:85318-85337
CTTAGCTGAAACCCTACAGGATAGTAGAAA85318GCAGAATGATATGTTTGAAGTGTTGAAAGATGAATTTGTCAGGCAAGAGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTTCAAACATATCATTCTGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTTCAAACATATCATTCTGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.112 | 0.103 | search_plus_done; http://172.18.8.135:50400/match?q=CTTCAAACATATCATTCTGC&k=0&no_gap=0&offset=0&limit=50
0.189 | 0.077 | search_minus_done; http://172.18.8.135:50400/match?q=GCAGAATGATATGTTTGAAG&k=0&no_gap=0&offset=0&limit=49
0.196 | 0.008 | cgi_end;

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