GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 07:27:22, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar Flame chromosome 5.
CP141914.1:6654589-6654608
GCTAATAATGTGATTATCACCAAGAACATC6654589CTTCTCAAAGGCCATTCTAATGTTTGCTTCTGTTACCTGGTTTTTCTTAT
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141931.1:6901209-6901228
GCGAATAATGTGATTATCACCAAGAACATC6901209CTTCTCAAAGGCCATTCTAATGTTTGCTTCTGTTACCTGGTTTTTCTTAT
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141957.1:6324965-6324984
GCTAATAATGTGATTATCACCAAGAACATC6324965CTTCTCAAAGGCCATTCTAATGTTTGCTTCTGTTACCTGGTTTTTCTTAT
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141974.1:6813979-6813998
GCTAATAATGTGATTATCACCAAGAACATC6813979CTTCTCAAAGGCCATTCTAATGTTTGCTTCTGTTACCTGGTTTTTCTTAT
Malus x robusta genome assembly, chromosome: 2.
OY720326.1:6612344-6612363
GCGAATAATGTGATTATCACCAAGAACATC6612344CTTCTCAAAGGCCATTCTAATGTTTGCTTCTGTTACCTGGTTTTTCTTAT
Viola odorata genome assembly, chromosome: 9.
OY829545.1:9002367-9002386
TCTAATTCCCTAATACAATTTGAAATTCCA9002367CTTCTCAAAGGCCATTCTAAACAGTAAAAACATACACTCTTCCTTCTTAA
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143362.1:39929809-39929828
ATAAGAAAAACCAGGTAACAGAAGCAAACA39929809TTAGAATGGCCTTTGAGAAGGATGTTCTTGGTGATAATCACATTATTCGC
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143379.1:36651417-36651436
ATAAGAAAAACCAGGTAACAGAAGCAAACA36651417TTAGAATGGCCTTTGAGAAGGATGTTCTTGGTGATAATCACATTATTAGC
Malus sylvestris genome assembly, chromosome: 5.
OU696507.1:40227728-40227747
ATAAGAAAAACCAGGTAACAGAAGCAAACA40227728TTAGAATGGCCTTTGAGAAGGATGTTCTTGGTGATAATCACATTATTCGC
Malus domestica genome assembly, chromosome: 5.
OU696681.1:39518923-39518942
ATAAGAAAAACCAGGTAACAGAAGCAAACA39518923TTAGAATGGCCTTTGAGAAGGATGTTCTTGGTGATAATCACATTATTCGC
Malus domestica genome assembly, chromosome: 5.
OU744546.1:39077482-39077501
ATAAGAAAAACCAGGTAACAGAAGCAAACA39077482TTAGAATGGCCTTTGAGAAGGATGTTCTTGGTGATAATCACATTATTCGC
Malus domestica genome assembly, chromosome: 5.
OU744957.1:39538976-39538995
ATAAGAAAAACCAGGTAACAGAAGCAAACA39538976TTAGAATGGCCTTTGAGAAGGATGTTCTTGGTGATAATCACATTATTCGC
Malus domestica genome assembly, chromosome: 5.
OU744995.1:40378548-40378567
ATAAGAAAAACCAGGTAACAGAAGCAAACA40378548TTAGAATGGCCTTTGAGAAGGATGTTCTTGGTGATAATCACATTATTCGC
Viola odorata genome assembly, chromosome: 5.
OY829541.1:68929152-68929171
AAGGGAAAATGATTTGTTTCAATTAAGCCT68929152TTAGAATGGCCTTTGAGAAGTGGAATTTCAAATTGTATTAGGGAATTAGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTTCTCAAAGGCCATTCTAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTTCTCAAAGGCCATTCTAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.097 | 0.088 | search_plus_done; http://172.18.8.135:50400/match?q=CTTCTCAAAGGCCATTCTAA&k=0&no_gap=0&offset=0&limit=50
0.116 | 0.019 | search_minus_done; http://172.18.8.135:50400/match?q=TTAGAATGGCCTTTGAGAAG&k=0&no_gap=0&offset=0&limit=44
0.121 | 0.005 | cgi_end;

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