GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-10 20:41:28, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KS24023C09 KS24 Capsicum annuum cDNA, mRNA sequence.
GD120016.1:397-418
CTCTGATTATTCTTGTATCATCCTCTCCAT397CTTGAGAGGAATTTGCCCACAAATTCACGGTTTCATCTCTTTCAATTGGCCA
TSA: Capsicum annuum MGMT_Contig2474, mRNA sequence.
JW052718.1:1117-1138
CCGTGATTATTCTTATATCATCCTCTCCAT1117CTTGAGAGGAATTTGCCCACAAATTCACGACTTCATCTCGTTCAATTGGCCA
TSA: Capsicum annuum MGMT_Contig39955 mRNA sequence.
JW090199.1:1529-1550
CTCTGATTATTCTTGTATCATCCTCTCCAT1529CTTGAGAGGAATTTGCCCACAAATTCACGGTTTCATCTCTTTCAATTGGCCA
TSA: Capsicum annuum CMCs80_73895, mRNA sequence.
JW117376.1:554-575
TCGTGATTATTCTTGTATCATCCTCTCCAT554CTTGAGAGGAATTTGCCCACAAATTCA
TSA: Capsicum annuum MA_MegaContig_23801, mRNA sequence.
JW159464.1:1976-1997
CCGTGATTATTCTTATATCATCCTCTCCAT1976CTTGAGAGGAATTTGCCCACAAATTCACGACTTCATCTCGTTCAATTGGCTA
Capsicum frutescens clone PEPBAC92, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces.
DQ913817.1:107707-107728
TTATGATCATACTTGTATCATCCTCTCCAT107707CTTGAGAGGAATTTGCCCACAAATTCATAACCTCACCTCTTTTACAAAGGCA
Capsicum annuum Takanotsume DNA, chromosome 1, sequence.
AP026696.1:27858781-27858802
CACTTGGGATCTTCGTATCATCCTCTCCAT27858781CTTGAGAGGAATTTGCCCACAAATCCATGATTTTACCTCATTGAATTGGCCA
Capsicum annuum Takanotsume DNA, chromosome 1, sequence.
AP026696.1:60613730-60613751
ACGTGATTATTCCCATATCATCCTCTCCAT60613730CTTGAGAGGAATTTGCCCACAAATTCACGGCTTTACCTCGATCAATCAACCA
Capsicum annuum Takanotsume DNA, chromosome 1, sequence.
AP026696.1:77626497-77626518
CCGTGATTATTCCCGTATCATCCTCTCCAT77626497CTTGAGAGGAATTTGCCCACAAATTCACGGCTTCACCTTGTTCAATCGGCCA
Capsicum annuum Takanotsume DNA, chromosome 1, sequence.
AP026696.1:155334278-155334299
TCGTGATTATTCTTGTATCATCCTCTCCAT155334278CTTGAGAGGAATTTGCCCACAAATTCACGGCTTCACCTCACTCAATTGGCCA
Capsicum annuum Takanotsume DNA, chromosome 1, sequence.
AP026696.1:182882507-182882528
TCATGATCATACTTGTATCATCCTCTCCAT182882507CTTGAGAGGAATTTGCCCACAAATTCATAACCTCACCTCTTTTACAAAGGCA
Capsicum annuum Takanotsume DNA, chromosome 1, sequence.
AP026696.1:200311937-200311958
CTATGATTATTCTTGTATCATCCTCTCCAT200311937CTTGAGAGGAATTTGCCCACAAATTCACAGCTTCACCTCGTACAATTGGCCA
Capsicum annuum Takanotsume DNA, chromosome 1, sequence.
AP026696.1:262144001-262144022
CCATGATTATTCTTGTATCATCCTCTCCAT262144001CTTGAGAGGAATTTGCCCACAAATTCACGGCTTCACCTCATGAAATTGGCCA
Capsicum annuum Takanotsume DNA, chromosome 1, sequence.
AP026696.1:303668312-303668333
CCGTGATTATTCGTGTATCATCCTCTCCAT303668312CTTGAGAGGAATTTGCCCACAAATTCCCAGCTTTACTTCATTCAATTGTCCA
Capsicum annuum Takanotsume DNA, chromosome 2, sequence.
AP026697.1:15422230-15422251
CCGTGATTATTCTTGTATCATCCTCTCCAT15422230CTTGAGAGGAATTTGCCCACAAATTCACGGCTTCACTTTGTTCAATTAGACA
Capsicum annuum Takanotsume DNA, chromosome 2, sequence.
AP026697.1:27314480-27314501
CCATGATTATTCCCGTATCATCCTCTCCAT27314480CTTGAGAGGAATTTGCCCACAAATTCACGGATTCACCTCGTTCACTTAATCA
Capsicum annuum Takanotsume DNA, chromosome 2, sequence.
AP026697.1:68859935-68859956
TCATGATCATACTTGTATCATCCTCTCTAT68859935CTTGAGAGGAATTTGCCCACAAATTCACGACCTCACCTCTTTTTGAGAGGTA
Capsicum annuum Takanotsume DNA, chromosome 2, sequence.
AP026697.1:119177895-119177916
CTGTGATTATTCTTGTATCATCCTCTCTAT119177895CTTGAGAGGAATTTGCCCACAAATTCACGGCTTCCCCTCGTTCAATTGGCCA
Capsicum annuum Takanotsume DNA, chromosome 2, sequence.
AP026697.1:142161441-142161462
TCATGATCATACTTGTATCATCCTCTCCAT142161441CTTGAGAGGAATTTGCCCACAAATTCATAACCTCACCTCTTTTACAAAGGCA
Capsicum annuum Takanotsume DNA, chromosome 2, sequence.
AP026697.1:152293031-152293052
CCGTGATTATTCTTGTATCATCCTCTCCAT152293031CTTGAGAGGAATTTGCCCACAAATTCACGGCTTCACCTCGCTCAATTGGCCA
Capsicum annuum Takanotsume DNA, chromosome 3, sequence.
AP026698.1:16418789-16418810
CCGTGATTATTCCCGTATCATCCTCTCCAT16418789CTTGAGAGGAATTTGCCCACAAATTCACGGCTTCACCTCGTTCAATCGGCCA
Capsicum annuum Takanotsume DNA, chromosome 3, sequence.
AP026698.1:43173857-43173878
CCATAATTATTCTCGTATCATCCTCTCCAT43173857CTTGAGAGGAATTTGCCCACAAATTCACGGCTTCACCTCGTTCAATTGGCCA
Capsicum annuum Takanotsume DNA, chromosome 3, sequence.
AP026698.1:109497896-109497917
TCATGATTATTCTTGTATCATCCTCTCCAT109497896CTTGAGAGGAATTTGCCCACAAATTCACAGCTTTATCTCGTTCAATTGGCCA
Capsicum annuum Takanotsume DNA, chromosome 3, sequence.
AP026698.1:150709666-150709687
TCGTGATTATTCTTGTATCATCCTCTCCAT150709666CTTGAGAGGAATTTGCCCACAAATTAACGGCTTTATCTCGTTCAATTGGACA
Capsicum annuum Takanotsume DNA, chromosome 3, sequence.
AP026698.1:186119313-186119334
TACGTGATCGCACTCGTATCTCCTCTCCAT186119313CTTGAGAGGAATTTGCCCACAAACTCACGGTTTCACCTCGTTTAATTGGCCA
Capsicum annuum Takanotsume DNA, chromosome 3, sequence.
AP026698.1:253248562-253248583
TGATGATCATACTTGTATTATCCTCTCCAT253248562CTTGAGAGGAATTTGCCCACAAATTCATAACCTCACCTTTTTTACAAAGGTA
Capsicum annuum Takanotsume DNA, chromosome 3, sequence.
AP026698.1:258649120-258649141
CCGTGATTATTCTTATATCATCCTCTCCAT258649120CTTGAGAGGAATTTGCCCACAAATTCATGGTTTTATCTTATTCAATTGGCCA
Capsicum annuum Takanotsume DNA, chromosome 3, sequence.
AP026698.1:258725661-258725682
CCGTGATTATTCTTATATCATCCTCTCTAT258725661CTTGAGAGGAATTTGCCCACAAATTCATGGGTTTATCTCATTCAATTGGCCA
Capsicum annuum Takanotsume DNA, chromosome 3, sequence.
AP026698.1:275939960-275939981
CTATGATTATTTCCGTATCATCCTCTCCAT275939960CTTGAGAGGAATTTGCCCACAAATTCACGGCTTCACGTCGTTCAATCAGCCA
Capsicum annuum Takanotsume DNA, chromosome 4, sequence.
AP026699.1:12554396-12554417
CCGGGATTATTCTTGTATCATCCTCTCCAT12554396CTTGAGAGGAATTTGCCCACAAATTCATGGCACAAAACAACCGGCAAAAACA
Capsicum annuum Takanotsume DNA, chromosome 4, sequence.
AP026699.1:47026400-47026421
CCATGATTATTATTTTATCATCCTCTCCAT47026400CTTGAGAGGAATTTGCCCACAAATTCATGGCTTCACTTTATACAATTAACTA
Capsicum annuum Takanotsume DNA, chromosome 4, sequence.
AP026699.1:68105821-68105842
CCTAGATTATTCTTATATCATCCTCTTCAT68105821CTTGAGAGGAATTTGCCCACAAATTCACGGCACAAAACAGCCCGCAAAAATA
Capsicum annuum Takanotsume DNA, chromosome 4, sequence.
AP026699.1:120393908-120393929
CCGTGATTATACTTGTATCATCCTCTCCAT120393908CTTGAGAGGAATTTGCCCACAAATTCATGGCTTAACCTCGTTCAATTAGCTA
Capsicum annuum Takanotsume DNA, chromosome 4, sequence.
AP026699.1:209138694-209138715
TCATGATCATACTCGTATCATCCTCTCCAT209138694CTTGAGAGGAATTTGCCCACAAATTCACGACCTCACCTCTTTTAGAGAGGAA
Capsicum annuum Takanotsume DNA, chromosome 4, sequence.
AP026699.1:216245509-216245530
TCATGATCATACTTGTATCATCCTCTCCAT216245509CTTGAGAGGAATTTGCCCACAAATTCATAACCTTACCTCTTTTACAAAGGCA
Capsicum annuum Takanotsume DNA, chromosome 4, sequence.
AP026699.1:216547831-216547852
CCGGGATTATTTTTGTATCATTCTCTCCAT216547831CTTGAGAGGAATTTGCCCACAAATTCACGGCTCAAAATAGCCAATAAAAACA
Capsicum annuum Takanotsume DNA, chromosome 4, sequence.
AP026699.1:234743309-234743330
CCGTGTTTATTCTTATATCATCCTCTCTAT234743309CTTGAGAGGAATTTGCCCACAAATTCACGACTTCATCTCATTCAATTGCCCA
Capsicum annuum Takanotsume DNA, chromosome 5, sequence.
AP026700.1:15503021-15503042
CTGTGATTATTCCCGTATTATCCTCTCTAT15503021CTTGAGAGGAATTTGCCCACAAATTCACGGTTTCACCTTGTTTAATTGGCCA
Capsicum annuum Takanotsume DNA, chromosome 5, sequence.
AP026700.1:105367356-105367377
TCGTGATTATTCTTGTATCATCCTCTCTAT105367356CTTGAGAGGAATTTGCCCACAAATTCACGGCTTTATCTCGTTCAATTGGCCA
Capsicum annuum Takanotsume DNA, chromosome 5, sequence.
AP026700.1:108887881-108887902
CTGTGATTATTCCCGTATCATCCTCTCCAT108887881CTTGAGAGGAATTTGCCCACAAATTCACAGTTTTACCTCGTTCAATTGGCCA
Capsicum annuum Takanotsume DNA, chromosome 5, sequence.
AP026700.1:206278961-206278982
TCGTGATTATTCTAGTATCATCCTCTCCAT206278961CTTGAGAGGAATTTGCCCACAAATTCACAGCTTTATCACGTTCAATTGGCCA
Capsicum annuum Takanotsume DNA, chromosome 5, sequence.
AP026700.1:239214037-239214058
CCTTGATTATTCTTGTATTATCCTTTCCAT239214037CTTGAGAGGAATTTGCCCACAAATTCACAGCTTCATCTCGTTCAATTGGCCA
Capsicum annuum Takanotsume DNA, chromosome 5, sequence.
AP026700.1:239270139-239270160
CCGTGGTTATTCCCGTATCATCCTCTCCAT239270139CTTGAGAGGAATTTGCCCACAAATTCACGGCTTCACCTCGTTCAATCGGCCA
Capsicum annuum Takanotsume DNA, chromosome 5, sequence.
AP026700.1:240710501-240710522
CCGTGATTATTCTTGTATCATCCTCTCCAT240710501CTTGAGAGGAATTTGCCCACAAATTCTCGGATTCACTTCGTGCAATTAGCCA
Capsicum annuum Takanotsume DNA, chromosome 5, sequence.
AP026700.1:241327282-241327303
TTATGATCATACTTGTATCATCCTCTCCAT241327282CTTGAGAGGAATTTGCCCACAAATTCATGACCTCGCCTCTTTTAGAGAGGTA
Capsicum annuum Takanotsume DNA, chromosome 5, sequence.
AP026700.1:243267641-243267662
CCGGGATTATTCTTGTATCATCCTCTCTAT243267641CTTGAGAGGAATTTGCCCACAAATTCACGGCACAAAACAGCCCGCAAAAACA
Capsicum annuum Takanotsume DNA, chromosome 6, sequence.
AP026701.1:34961006-34961027
CTGTGATTATTCCTATATCATTCTCTCCAT34961006CTTGAGAGGAATTTGCCCACAAATTCACAGCTTCACCTCATTCAATTGGCCA
Capsicum annuum Takanotsume DNA, chromosome 6, sequence.
AP026701.1:71378578-71378599
CCATGATTATTCTTGTATCATCCTCTCCAC71378578CTTGAGAGGAATTTGCCCACAAATTCACGGCTTCACGTCGTTCAATTGGCCA
Capsicum annuum Takanotsume DNA, chromosome 6, sequence.
AP026701.1:152997654-152997675
CCGTGATTATTCTTGTATCATCCTCTCCAT152997654CTTGAGAGGAATTTGCCCACAAATTCACGACTTTATCTCATTCAATTAGCCA
Capsicum annuum Takanotsume DNA, chromosome 6, sequence.
AP026701.1:200972748-200972769
CCGTGATTATTCTTGTTTCATCCTCTCCAT200972748CTTGAGAGGAATTTGCCCACAAATTCATGGCTTTATTTCGTTTAATTGGCCA
Capsicum annuum Takanotsume DNA, chromosome 6, sequence.
AP026701.1:222847666-222847687
AAATTATCGTACTCATATCATCCTTTCCAT222847666CTTGAGAGGAATTTGCCCACAAATTCATGGTTTCACCTCGTTAATTGGTCAC
Capsicum annuum Takanotsume DNA, chromosome 6, sequence.
AP026701.1:223012464-223012485
ACGTTATTGCACTCATATCATCCTCTCCAT223012464CTTGAGAGGAATTTGCCCACAAATTCACGGTTTCACCTCATTTAATTGGTCA
Capsicum annuum Takanotsume DNA, chromosome 6, sequence.
AP026701.1:223716494-223716515
AAGCTAACTCACTCATATCATCCTCTCCAT223716494CTTGAGAGGAATTTGCCCACAAATTCACCATTTCACCTCGTTCAATTGGTCA
Capsicum annuum Takanotsume DNA, chromosome 6, sequence.
AP026701.1:239254456-239254477
ACGTGATCTCACTCGTATCATCCTCTCCAT239254456CTTGAGAGGAATTTGCCCACAAATTCATGGTTTCACCTCGTTCAATTGGCCA
Capsicum annuum Takanotsume DNA, chromosome 6, sequence.
AP026701.1:240029238-240029259
CCGTGATTATTCCCGTATCATCCTCTCTAT240029238CTTGAGAGGAATTTGCCCACAAATTCACGGCTTCACCTTGTTCAATCGGCCA
Capsicum annuum Takanotsume DNA, chromosome 7, sequence.
AP026702.1:26035927-26035948
CCGGGACTATTCTTGTATCATCCTCTCTAT26035927CTTGAGAGGAATTTGCCCACAAATTCACGGCACAAAATAGCCCGCAAAAATA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTTGAGAGGAATTTGCCCACAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTTGAGAGGAATTTGCCCACAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.245 | 0.236 | search_plus_done; http://172.18.8.135:50400/match?q=CTTGAGAGGAATTTGCCCACAA&k=0&no_gap=0&offset=0&limit=50
0.298 | 0.053 | search_minus_done; http://172.18.8.135:50400/match?q=TTGTGGGCAAATTCCTCTCAAG&k=0&no_gap=0&offset=0&limit=0
0.298 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).