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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-13 03:38:13, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

030108ABPB001614HT (ABPB) M9 root tips Malus domestica cDNA clone ABPB001614, mRNA sequence.
EB151624.1:579-600
TCGTCAACTTGCTCGACTCTCCCTCCACTT579CTTTGGCTTTGATATTCAAGGGCTTAGGAGCCGGCTTCCTAAGCA
030108ABMA005730HT (ABMA) M9 phloem Malus domestica cDNA clone ABMA005730, mRNA sequence.
EB154858.1:572-593
TCGTCAACTTGCTCGACTCTCCCTCCACTT572CTTTGGCTTTGATATTCAAGGGCTTAGGAGCCGGCTTCCTAAGCATGTCAAG
fl_05F03_CA10 Md_fruit-leaf_subtractive_cDNA_library Malus domestica cDNA, mRNA sequence.
GD255015.1:57-78
TCGTCAACTTGCTCGACTCTCCCTCCACTT57CTTTGGCTTTGATATTCAAGGGCTTAGGAGCCGGCTTCCTAAGCATGTCAAG
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141914.1:3737121-3737142
AACGTCGTGCCCAGAGAATAATTGTAGTAC3737121CTTTGGCTTTGATATTCAAGGGCTTAGGAGCCGGCCTCCTAAGCATGTCAAG
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141931.1:4174418-4174439
AACGTCGTGCCCAGAGAATGATTGTAGTAC4174418CTTTGGCTTTGATATTCAAGGGCTTAGGAGCCGGCTTCCTAAGCATGTCAAG
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141957.1:3594915-3594936
AACGTCGTGCCCAGAGAATAATTGTAGTAC3594915CTTTGGCTTTGATATTCAAGGGCTTAGGAGCCGGCCTCCTAAGCATGTCAAG
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141974.1:4014075-4014096
AACGTCGTGCCCAGAGAATAATTGTAGTAC4014075CTTTGGCTTTGATATTCAAGGGCTTAGGAGCCGGCCTCCTAAGCATGTCAAG
Malus x robusta genome assembly, chromosome: 2.
OY720326.1:3757282-3757303
AACGTCGTGCCCAGAGAATGATTGTAGTAC3757282CTTTGGCTTTGATATTCAAGGGCTTAGGAGCCGGCTTCCTAAGCATGTCAAG
Malus x domestica cDNA, clone: F080, 3'-EST.
AB331736.1:133-154
CTTGACATGCTTAGGAAGCCGGCTCCTAAG133CCCTTGAATATCAAAGCCAAAGAATTGGAGGGAGAGTCGAGCAAGTTGACGA
FT_2__B10_FT_2_B10_089.ab1 Chromat_id=279651-743 apple (Malus x domestica) fruit Malus domestica cDNA 5', mRNA sequence.
CK900633.1:96-117
CTTGACATGCTTAGGAGGCCGGCTCCTAAG96CCCTTGAATATCAAAGCCAAAGAAGTGGAGGGAGAGTCGAGCAAGTTGACGA
Mdfw2027m11.y1 Mdfw Malus domestica cDNA clone Mdfw2027m11 5' similar to TR:Q43548 Q43548 GOLDEN DELICIOUS APPLE FRUIT EXPRESSED, mRNA sequence.
CN488688.1:125-146
CTTGACATGCTTAGGAGGCCGGCTCCTAAG125CCCTTGAATATCAAAGCCAAAGAAGTGGAGGGAGAGTCGAGCAAGTTGACGA
Mdfw2024g13.y1 Mdfw Malus domestica cDNA clone Mdfw2024g13 5' similar to TR:Q43548 Q43548 GOLDEN DELICIOUS APPLE FRUIT EXPRESSED, mRNA sequence.
CN489667.1:131-152
CTTGACATGCTTAGGAAGCCGGCTCCTAAG131CCCTTGAATATCAAAGCCAAAGTGGAGGGAGAGTCGAGCAAGTTGACGATGC
Mdfw2048m13.y1 Mdfw Malus domestica cDNA clone Mdfw2048m13 5' similar to TR:Q43548 Q43548 GOLDEN DELICIOUS APPLE FRUIT EXPRESSED, mRNA sequence.
CN993608.1:118-139
CTTGACATGCTTAGGAGGCCGGCTCCTAAG118CCCTTGAATATCAAAGCCAAAGAAGTGGAGGGAGAGTCGAGCAAGTTGACGA
Mdfw2052o09.y1 Mdfw Malus domestica cDNA clone Mdfw2052o09 5' similar to TR:Q43548 Q43548 GOLDEN DELICIOUS APPLE FRUIT EXPRESSED, mRNA sequence.
CN997399.1:130-151
CTTGACATGCTTAGGAAGCCGGCTCCTAAG130CCCTTGAATATCAAAGCCAAAGAAGTGGAGGGAGAGTCGAGCAAGTTGACGA
Mdfrt3028h10.y1 Mdfrt Malus domestica cDNA clone Mdfrt3028h10 5' similar to TR:Q43548 Q43548 GOLDEN DELICIOUS APPLE FRUIT EXPRESSED, mRNA sequence.
CO068070.1:107-128
CTTGACATGCTTAGGAAGCCGGCTCCTAAG107CCCTTGAATATCAAAGCCAAAGAAGTGGAGGGAGAGTCGAGCAAGTTGACGA
Mdfrt3029l15.y1 Mdfrt Malus domestica cDNA clone Mdfrt3029l15 5' similar to TR:Q43548 Q43548 GOLDEN DELICIOUS APPLE FRUIT EXPRESSED, mRNA sequence.
CO068326.1:76-97
CTTGACATGCTTAGGAGGCCGGCTCCTAAG76CCCTTGAATATCAAAGCCAAAGAAGTGGAGGGAGAGTCGAGCAAGTTGACGA
Mdfrt3030o17.y1 Mdfrt Malus domestica cDNA clone Mdfrt3030o17 5' similar to TR:Q43548 Q43548 GOLDEN DELICIOUS APPLE FRUIT EXPRESSED, mRNA sequence.
CO068521.1:129-150
CTTGACATGCTTAGGAAGCCGGCTCCTAAG129CCCTTGAATATCAAAGCCAAAGAAGTGGAGGGAGAGTCGAGCAAGTTGACGA
Mdfrt3032l02.y1 Mdfrt Malus domestica cDNA clone Mdfrt3032l02 5' similar to TR:Q43548 Q43548 GOLDEN DELICIOUS APPLE FRUIT EXPRESSED, mRNA sequence.
CO418160.1:121-142
CTTGACATGCTTAGGAGGCCGGCTCCTAAG121CCCTTGAATATCAAAGCCAAAGTGGAGGGAGAGTCGAGCAAGTTGACGATGC
Mdfrt3033o02.y1 Mdfrt Malus domestica cDNA clone Mdfrt3033o02 5' similar to TR:Q43548 Q43548 GOLDEN DELICIOUS APPLE FRUIT EXPRESSED, mRNA sequence.
CO418358.1:129-150
CTTGACATGCTTAGGAAGCCGGCTCCTAAG129CCCTTGAATATCAAAGCCAAAGAAGTGGAGGGAGAGTCGAGCAAGTTGACGA
Mdfrt3036i01.y1 Mdfrt Malus domestica cDNA clone Mdfrt3036i01 5' similar to TR:Q43548 Q43548 GOLDEN DELICIOUS APPLE FRUIT EXPRESSED, mRNA sequence.
CO418914.1:124-145
CTTGACATGCTTAGGAAGCCGGCTCCTAAG124CCCTTGAATATCAAAGCCAAAGAAGTGGAGGGAGAGTCGAGCAAGTTGACGA
Mddb5003h24.y1 Mddb Malus domestica cDNA clone Mddb5003h24 5' similar to TR:Q43548 Q43548 GOLDEN DELICIOUS APPLE FRUIT EXPRESSED, mRNA sequence.
CO723713.1:95-116
CTTGACATGCTTAGGAAGCCGGCTCCTAAG95CCCTTGAATATCAAAGCCAAAGAAGTGGAGGGAGAGTCGAGCAAGTTGACGA
Mdfrt3053m02.y1 Mdfrt Malus domestica cDNA clone Mdfrt3053m02 5' similar to TR:Q43548 Q43548 GOLDEN DELICIOUS APPLE FRUIT EXPRESSED, mRNA sequence.
CO752199.1:89-110
CTTGACATGCTTACGAAGCCGGCTCCTAAG89CCCTTGAATATCAAAGCCAAAGAAGTGGAGGGAGAGTCGAGCAAGTTGACGA
Mdfr3020p10.y1 Mdfr Malus domestica cDNA clone Mdfr3020p10 5' similar to TR:Q43548 Q43548 GOLDEN DELICIOUS APPLE FRUIT EXPRESSED, mRNA sequence.
CO754049.1:28-49
GACATGCTTAGGAGGCCGGCTCCTAAG28CCCTTGAATATCAAAGCCAAAGAAGTGGAGGGAGAGTCGAGCAAGTTGACGA
Mdfrt3048c08.y1 Mdfrt Malus domestica cDNA clone Mdfrt3048c08 5' similar to TR:Q43548 Q43548 GOLDEN DELICIOUS APPLE FRUIT EXPRESSED, mRNA sequence.
CO754954.1:114-135
CTTGACATGCTTAGGAAGCCGGCTCCTAAG114CCCTTGAATATCAAAGCCAAAGTAGTGGAGGGAGAGTCGAGCAAGTTGACGA
Mdfrt3047p15.y1 Mdfrt Malus domestica cDNA clone Mdfrt3047p15 5' similar to TR:Q43548 Q43548 GOLDEN DELICIOUS APPLE FRUIT EXPRESSED, mRNA sequence.
CO756539.1:85-106
CTTGACATGCTTAGGAGGCCGGCTCCTAAG85CCCTTGAATATCAAAGCCAAAGAAGTGGAGGGAGAGTCGAGCAAGTTGACGA
Mdfrt3054g10.y1 Mdfrt Malus domestica cDNA clone Mdfrt3054g10 5' similar to TR:Q43548 Q43548 GOLDEN DELICIOUS APPLE FRUIT EXPRESSED, mRNA sequence.
CO898674.1:114-135
CTTGACATGCTTAGGAGGCCGGCTCCTAAG114CCCTTGAATATCAAAGCCAAAGAAGTGGAGGGAGAGTCGAGCAAGTTGTCGA
Mdfrt3055k13.y1 Mdfrt Malus domestica cDNA clone Mdfrt3055k13 5' similar to TR:Q43548 Q43548 GOLDEN DELICIOUS APPLE FRUIT EXPRESSED, mRNA sequence.
CO898944.1:112-133
CTTGACATGCTTAGGAGGCCGGCTCCTAAG112CCCTTGAATATCAAAGCCAAAGAAGTGGAGGGAGAGTCGAGCAAGTTGACGA
Mddb5025h16.y1 Mddb Malus domestica cDNA clone Mddb5025h16 5' similar to TR:Q43548 Q43548 GOLDEN DELICIOUS APPLE FRUIT EXPRESSED, mRNA sequence.
CO900348.1:55-76
CTTGACATGCTTAGGAAGCCGGCTCCTAAG55CCCTTGAATATCAAAGCCAAAGTGGAGGGAGAGTCGAGCAAGTTGACGATGC
Mdfrt3061b03.y1 Mdfrt Malus domestica cDNA clone Mdfrt3061b03 5' similar to TR:Q43548 Q43548 GOLDEN DELICIOUS APPLE FRUIT EXPRESSED, mRNA sequence.
CO900852.1:95-116
CTTGACATGCTTAGGAAGCCGGCTCCTAAG95CCCTTGAATATCAAAGCCAAAGAAGTGGAGGGAGAGTCGAGCAAGTTGACGA
Mdfrt3066j18.y1 Mdfrt Malus domestica cDNA clone Mdfrt3066j18 5' similar to TR:Q43548 Q43548 GOLDEN DELICIOUS APPLE FRUIT EXPRESSED, mRNA sequence.
CO901153.1:108-129
CTTGACATGCTTAGGAGGCCGGCTCCTAAG108CCCTTGAATATCAAAGCCAAAGAAGTGGAGGGAGAGTCGAGCAAGTTGACGA
Mdfrt3057m18.y1 Mdfrt Malus domestica cDNA clone Mdfrt3057m18 5' similar to TR:Q43548 Q43548 GOLDEN DELICIOUS APPLE FRUIT EXPRESSED, mRNA sequence.
CO902279.1:136-157
CTTGACATGCTTAGGAAGCCGGCTCCTAAG136CCCTTGAATATCAAAGCCAAAGAAGTGGAGGGAGAGTCGAGCAAGTTGACGA
Mdfrt3058m22.y1 Mdfrt Malus domestica cDNA clone Mdfrt3058m22 5' similar to TR:Q43548 Q43548 GOLDEN DELICIOUS APPLE FRUIT EXPRESSED, mRNA sequence.
CO902594.1:114-135
CTTGACATGCTTAGGAGGCCGGCTCCTAAG114CCCTTGAATATCAAAGCCAAAGAAGTGGAGGGAGAGTCGAGCAAGTTGTCGA
Mdfrt3059m02.y1 Mdfrt Malus domestica cDNA clone Mdfrt3059m02 5' similar to TR:Q43548 Q43548 GOLDEN DELICIOUS APPLE FRUIT EXPRESSED, mRNA sequence.
CO902890.1:112-133
CTTGACATGCTTAGGAGGCCGGCTCCTAAG112CCCTTGAATATCAAAGCCAAAGAAGTGGAGGGAGAGTCGAGCAAGTTGACGA
Mdfrt3063i19.y1 Mdfrt Malus domestica cDNA clone Mdfrt3063i19 5' similar to TR:Q43548 Q43548 GOLDEN DELICIOUS APPLE FRUIT EXPRESSED, mRNA sequence.
CO904464.1:108-129
CTTGACATGCTTAGGAGGCCGGCTCCTAAG108CCCTTGAATATCAAAGCCAAAGAAGTGGAGGGAGAGTCGAGCAAGTTGACGA
Mdfrt3065a04.y1 Mdfrt Malus domestica cDNA clone Mdfrt3065a04 5' similar to TR:Q43548 Q43548 GOLDEN DELICIOUS APPLE FRUIT EXPRESSED, mRNA sequence.
CO905135.1:95-116
CTTGACATGCTTAGGAAGCCGGCTCCTAAG95CCCTTGAATATCAAAGCCAAAGAAGTGGAGGGAGAGTCGAGCAAGTTGACGA
Mdfrt3069o03.y1 Mdfrt Malus domestica cDNA clone Mdfrt3069o03 5' similar to TR:Q43548 Q43548 GOLDEN DELICIOUS APPLE FRUIT EXPRESSED, mRNA sequence.
CV081885.1:95-116
CTTGACATGCTTAGGAAGCCGGCTCCTAAG95CCCTTGAATATCAAAGCCAAAGAAGTGGAGGGAGAGTCGAGCAAGTTGACGA
Mdfrt3070f15.y1 Mdfrt Malus domestica cDNA clone Mdfrt3070f15 5' similar to TR:Q43548 Q43548 GOLDEN DELICIOUS APPLE FRUIT EXPRESSED, mRNA sequence.
CV082268.1:108-129
CTTGACATGCTTAGGAGGCCGGCTCCTAAG108CCCTTGAATATCAAAGCCAAAGAAGTGGAGGGAGAGTCGAGCAAGTTGACGA
Mdst6001g24.y1 Mdst Malus domestica cDNA clone Mdst6001g24 5' similar to TR:Q43548 Q43548 GOLDEN DELICIOUS APPLE FRUIT EXPRESSED, mRNA sequence.
CV082493.1:117-138
CTTGACATGCTTAGGAAGCCGGCTCCTAAG117CCCTTGAATATCAAAGCCAAAGAAGTGGAGGGAGAGTCGAGCAAGTTGACGA
Mdfrt3085i24.y1 Mdfrt Malus domestica cDNA clone Mdfrt3085i24 5' similar to TR:Q43548 Q43548 GOLDEN DELICIOUS APPLE FRUIT EXPRESSED, mRNA sequence.
CV084484.1:114-135
CTTGACATGCTTAGGAGGCCGGCTCCTAAG114CCCTTGAATATCAAAGCCAAAGAAGTGGAGGGAGAGTCGAGCAAGTTGACGA
Mdfrt3075d08.y1 Mdfrt Malus domestica cDNA clone Mdfrt3075d08 5' similar to TR:Q43548 Q43548 GOLDEN DELICIOUS APPLE FRUIT EXPRESSED, mRNA sequence.
CV084796.1:135-156
CTTGACATGCTTAGGAAGCCGGCTCCTAAG135CCCTTGAATATCAAAGCCAAAGAAGTGGAGGGAGAGTCGAGCAAGTTGACGA
Mdfrt3080k07.y1 Mdfrt Malus domestica cDNA clone Mdfrt3080k07 5' similar to TR:Q43548 Q43548 GOLDEN DELICIOUS APPLE FRUIT EXPRESSED, mRNA sequence.
CV085966.1:135-156
CTTGACATGCTTAGGAAGCCGGCTCCTAAG135CCCTTGAATATCAAAGCCAAAGAAGTGGAGGGAGAGTCGAGCAAGTTGACGA
Mdfrt3090o15.y1 Mdfrt Malus domestica cDNA clone Mdfrt3090o15 5' similar to TR:Q43548 Q43548 GOLDEN DELICIOUS APPLE FRUIT EXPRESSED, mRNA sequence.
CV128798.1:114-135
CTTGACATGCTTAGGAGGCCGGCTCCTAAG114CCCTTGAATATCAAAGCCAAAGAAGTGGAGGGAGAGTCGAGCAAGTTGACGA
Mdfrt3091a14.y1 Mdfrt Malus domestica cDNA clone Mdfrt3091a14 5' similar to TR:Q43548 Q43548 GOLDEN DELICIOUS APPLE FRUIT EXPRESSED, mRNA sequence.
CV129050.1:135-156
CTTGACATGCTTAGGAAGCCGGCTCCTAAG135CCCTTGAATATCAAAGCCAAAGAAGTGGAGGGAGAGTCGAGCAAGTTGACGA
Mdfrt3091e20.y1 Mdfrt Malus domestica cDNA clone Mdfrt3091e20 5' similar to TR:Q43548 Q43548 GOLDEN DELICIOUS APPLE FRUIT EXPRESSED, mRNA sequence.
CV129071.1:101-122
CTTGACATGCTTAGGAGGCCGGCTCCTAAG101CCCTTGAATATCAAAGCCAAAGAAGTGGAGGGAGAGTCGAGCAAGTTGACGA
Mdfrt3087c07.y1 Mdfrt Malus domestica cDNA clone Mdfrt3087c07 5' similar to TR:Q43548 Q43548 GOLDEN DELICIOUS APPLE FRUIT EXPRESSED, mRNA sequence.
CV129908.1:135-156
CTTGACATGCTTAGGAAGCCGGCTCCTAAG135CCCTTGAATATCAAAGCCAAAGAAGTGGAGGGAGAGTCGAGCAAGTTGACGA
Mdfrt3087i15.y1 Mdfrt Malus domestica cDNA clone Mdfrt3087i15 5' similar to TR:Q43548 Q43548 GOLDEN DELICIOUS APPLE FRUIT EXPRESSED, mRNA sequence.
CV129941.1:101-122
CTTGACATGCTTAGGAGGCCGGCTCCTAAG101CCCTTGAATATCAAAGCCAAAGAAGTGGAGGGAGAGTCGAGCAAGTTGACGA
Mdfrt3094k20.y2 Mdfrt Malus domestica cDNA clone Mdfrt3094k20 5' similar to TR:Q43548 Q43548 GOLDEN DELICIOUS APPLE FRUIT EXPRESSED, mRNA sequence.
CV465901.1:114-135
CTTGACATGCTTAGGAGGCCGGCTCCTAAG114CCCTTGAATATCAAAGCCAAAGAAGTGGAGGGAGAGTCGAGCAAGTTGACGA
Mdfrt3095b23.y2 Mdfrt Malus domestica cDNA clone Mdfrt3095b23 5' similar to TR:Q43548 Q43548 GOLDEN DELICIOUS APPLE FRUIT EXPRESSED, mRNA sequence.
CV466153.1:101-122
CTTGACATGCTTAGGAGGCCGGCTCCTAAG101CCCTTGAATATCAAAGCCAAAGAAGTGGAGGGAGAGTCGAGCAAGTTGACGA
Mdfrt3095f17.y2 Mdfrt Malus domestica cDNA clone Mdfrt3095f17 5' similar to TR:Q43548 Q43548 GOLDEN DELICIOUS APPLE FRUIT EXPRESSED, mRNA sequence.
CV466170.1:135-156
CTTGACATGCTTAGGAAGCCGGCTCCTAAG135CCCTTGAATATCAAAGCCAAAGAAGTGGAGGGAGAGTCGAGCAAGTTGACGA
Mdst6012i13.y1 Mdst Malus domestica cDNA clone Mdst6012i13 5' similar to TR:Q43548 Q43548 GOLDEN DELICIOUS APPLE FRUIT EXPRESSED, mRNA sequence.
CV628750.1:122-143
CTTGACATGCTTAGGAGGCCGGCTCCTAAG122CCCTTGAATATCAAAGCCAAAGAAGTGGAGGGAGAGTCGAGCAAGTTGACGA
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143362.1:42764554-42764575
CTTGACATGCTTAGGAAGCCGGCTCCTAAG42764554CCCTTGAATATCAAAGCCAAAGGTACTACAATCATTCTCTGGGCACGACGTT
Malus x domestica unknown mRNA.
L15194.1:124-145
CTTGACATGCTTAGGAGGCCGGCTCCTAAG124CCCTTGAATATCAAAGCCAAAGAAGTGGAGGGAGAGTCGAGCAAGTTGACGA
Malus sylvestris genome assembly, chromosome: 5.
OU696507.1:43098584-43098605
CTTGACATGCTTAGGAAGCCGGCTCCTAAG43098584CCCTTGAATATCAAAGCCAAAGGTACTACAATCATTCTCTGGGCACGACGTT
Malus domestica genome assembly, chromosome: 5.
OU696681.1:42508615-42508636
CTTGACATGCTTAGGAAGCCGGCTCCTAAG42508615CCCTTGAATATCAAAGCCAAAGGTACTACAATCATTCTCTGGGCACGACGTT
Malus domestica genome assembly, chromosome: 5.
OU744546.1:41941828-41941849
CTTGACATGCTTAGGAAGCCGGCTCCTAAG41941828CCCTTGAATATCAAAGCCAAAGGTACTACAATCATTCTCTGGGCACGACGTT
Malus domestica genome assembly, chromosome: 5.
OU744957.1:42415538-42415559
CTTGACATGCTTAGGAAGCCGGCTCCTAAG42415538CCCTTGAATATCAAAGCCAAAGGTACTACAATCATTCTCTGGGCACGACGTT
Malus domestica genome assembly, chromosome: 5.
OU744995.1:43366649-43366670
CTTGACATGCTTAGGAAGCCGGCTCCTAAG43366649CCCTTGAATATCAAAGCCAAAGGTACTACAATCATTCTCTGGGCACGACGTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTTTGGCTTTGATATTCAAGGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTTTGGCTTTGATATTCAAGGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.246 | 0.236 | search_plus_done; http://172.18.8.135:50400/match?q=CTTTGGCTTTGATATTCAAGGG&k=0&no_gap=0&offset=0&limit=50
1.636 | 1.391 | search_minus_done; http://172.18.8.135:50400/match?q=CCCTTGAATATCAAAGCCAAAG&k=0&no_gap=0&offset=0&limit=42
1.669 | 0.033 | cgi_end;

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