GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-18 05:40:21, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Pyrus pyrifolia mRNA, clone: NFR2_07_02, 3' end sequence, expressed in fruit.
HX739768.1:551-574
TTAGATTAAACTAAGCTGGACTAGTTTAGT551GAAACGTTTGGTGCAATATCAGACAAAACTACACACTAATTATTTATTATTATT
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143375.1:28970334-28970357
GCTGCAGGGACTAAGTTGGACTAGCTTAGT28970334GAAACGTTTGGTGCAATATCAGACTAAGAAGCAGGATAATGAAGAAAGAAAAAA
Malus x robusta genome assembly, chromosome: 13.
OY720337.1:7847686-7847709
TTGGCATGGACTAAGTAGTATAAAGATAAT7847686GAAACGTTTGGTGCAATATCAGACTAAATTACGGACTCAATTATTTTTGCAGAT
Malus x robusta genome assembly, chromosome: 13.
OY720337.1:7963465-7963488
TTGGCATGGACTAAGTAGTATAAAGATAAT7963465GAAACGTTTGGTGCAATATCAGACTAAATTACGGACTCAATTATTTTTGCAGAT
Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH018_03702m, 5' end sequence.
AB450703.1:178-201
AATAATAATAAATAATTAGTGTGTAGTTTT178GTCTGATATTGCACCAAACGTTTCACTAAACTAGTCCAGCTTAGTTTAATCTAA
Pyrus pyrifolia mRNA, clone: NFR2_07_02, 5' end sequence, expressed in fruit.
HX748834.1:114-137
AATAATAATAAATAATTAGNGTGTAGTTTT114GTCTGATATTGCACCAAACGTTTCACTAAACTAGTCCAGCTTAGTTTAATCTAA
TSA: Pyrus pyrifolia mRNA, contig: contig_7392.
FX433749.1:182-205
AATAATAATAAATAATTAGTGTGTAGTTTT182GTCTGATATTGCACCAAACGTTTCACTAAACTAGTCCAGCTTAGTTTAATCTAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GAAACGTTTGGTGCAATATCAGAC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GAAACGTTTGGTGCAATATCAGAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.185 | 0.176 | search_plus_done; http://172.18.8.135:50400/match?q=GAAACGTTTGGTGCAATATCAGAC&k=0&no_gap=0&offset=0&limit=50
0.290 | 0.105 | search_minus_done; http://172.18.8.135:50400/match?q=GTCTGATATTGCACCAAACGTTTC&k=0&no_gap=0&offset=0&limit=46
0.293 | 0.002 | cgi_end;

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