GGGenome | Results

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2025-04-11 03:47:38, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Malus x robusta genome assembly, chromosome: 12.
OY720336.1:2568898-2568917

CTGGAGTTCGATTTTGTCCTTAGAAAGCGA2568898GAAAGGGGTTGCCATAACTCCTGCATTGTTACTTATGATAAAACAAGTAC

Crataegus laevigata genome assembly, chromosome: 14.
OY756951.1:2856299-2856318

CTGAAGTTCGATTTTGTCCTTAGAAAGCAA2856299GAAAGGGGTTGCCATAACTCCTGCATTGTTACTTATGATAAAACAAGTAC

Pyrus communis genome assembly, chromosome: 16.
OY757083.1:2215546-2215565

CTGAAGTTCGATTTTGTCCTTAGAAAGCAA2215546GAAAGGGGTTGCCATAACTCCTGCATTGTTACTTCATGATAAAACAAGTA

020813AARA008562HT (AARA) Royal Gala partially senescing leaf Malus domestica cDNA clone AARA008562, mRNA sequence.
CN875994.1:364-383

TTCCTCTCAACATCCTAATTAACAATGCAG364GAGTTATGGCAACCCCTTTCTTGCTTTCTAAGGACAAAATCGAACTCCAG

Mdfrt3038e21.y1 Mdfrt Malus domestica cDNA clone Mdfrt3038e21 5' similar to TR:O81739 O81739 HYPOTHETICAL 31.8 KD PROTEIN, mRNA sequence.
CO540841.1:238-257

TTCCTCTCAACATCCTAATTAACAATGCAG238GAGTTATGGCAACCCCTTTCTCGCTTTCTAAGGACAAAATCGAACTCCAG

Mdlv3_4036h08.y1 Mdlv3 Malus domestica cDNA clone Mdlv3_4036h08 5' similar to TR:O81739 O81739 HYPOTHETICAL 31.8 KD PROTEIN, mRNA sequence.
CV987188.1:349-368

TTCCTCTCAACATCCTAATTAACAATGCAG349GAGTTATGGCAACCCCTTTCTTGCTTTCTAAGGACAAAATCGAACTCCAG

020905AARA014063HT (AARA) Royal Gala partially senescing leaf Malus domestica cDNA clone AARA014063, mRNA sequence.
EB123982.1:311-330

TTCCTCTCAACATCCTAATTAACAATGCAG311GAGTTATGGCAACCCCTTTCTTGCTTTCTAAGGACAAAATCGAACTCCAG

010922AVBC202052PG (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC202052, mRNA sequence.
EB129381.1:368-387

TTCCTCTCAACATCCTAATTAACAATGCAG368GAGTTATGGCAACCCCTTTCTTGCTTTCTAAGGACAAAATCGAACTCCAG

011001AVBC212033PG (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC212033, mRNA sequence.
EB129908.1:370-389

TTCCTCTCAACATCCTAATTAACAATGCAG370GAGTTATGGCAACCCCTTTCTTGCTTTCTAAGGACAAAATCGAACTCCAG

020802AVBC011123HT (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC011123, mRNA sequence.
EB131561.1:347-366

TTCCTCTCAACATCCTAATTAACAATGCAG347GAGTTATGGCAACCCCTTTCTTGCTTTCTAAGGACAAAATCGAACTCCAG

020808AVBC013497HT (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC013497, mRNA sequence.
EB132337.1:347-366

TTCCTCTCAACATCCTAATTAACAATGCAG347GAGTTATGGCAACCCCTTTCTTGCTTT

TSA: Pyrus x bretschneideri Unigene86416_XinShao mRNA sequence.
JR670314.1:219-238

TTCCTCTCAACATCCTAATTAACAATGCAG219GAGTTATGGCAACCCCTTTCTTGCTTTCTAAGGACAAAATCGAACTTCAG

Fragaria x ananassa cultivar Benihoppe chromosome 20.
CP139756.1:3062007-3062026

CAAAAGAAAAAGAAAGAAAAAAAGAAAAAA3062007GAGTTATGGCAACCCCTTTCCTGGAAACAGATAACTGAATTCTGGAAAAG

Malus hybrid cultivar cultivar Flame chromosome 1.
CP141910.1:41704178-41704197

GTACTTGTTTTATCATAAGTAACAATGCAG41704178GAGTTATGGCAACCCCTTTCTCGCTTTCTAAGGACAAAATCGAACTCCAG

Malus hybrid cultivar cultivar Flame chromosome 1.
CP141927.1:31183527-31183546

TACTTGTTTTATCATTAAGTAACAATGCAG31183527GAGTTATGGCAACCCCTTTCTTGCTTTCTAAGGACAAAATCGAACTCCAG

Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141953.1:29419719-29419738

GTACTTGTTTTATCATAAGTAACAATGCAG29419719GAGTTATGGCAACCCCTTTCTCGCTTTCTAAGGACAAAATCGAACTCCAG

Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141970.1:31173672-31173691

GTACTTGTTTTATCATAAGTAACAATGCAG31173672GAGTTATGGCAACCCCTTTCTCGCTTTCTAAGGACAAAATCGAACTCCAG

Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143358.1:30782712-30782731

TACTTGTTTTATCATTAAGTAACAATGCAG30782712GAGTTATGGCAACCCCTTTCTTGCTTTCTAAGGACAAAATCGAACTCCAG

Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143375.1:29338083-29338102

GTACTTGTTTTATCATAAGTAACAATGCAG29338083GAGTTATGGCAACCCCTTTCTTGCTTTCTAAGGACAAAATCGAACTCCAG

Malus sylvestris genome assembly, chromosome: 1.
OU696503.1:27591304-27591323

TACTTGTTTTATCATTAAGTAACAATGCAG27591304GAGTTATGGCAACCCCTTTCTTGCTTTCTAAGGACAAAATCGAACTCCAG

Malus domestica genome assembly, chromosome: 1.
OU696677.1:27606809-27606828

TACTTGTTTTATCATTAAGTAACAATGCAG27606809GAGTTATGGCAACCCCTTTCTTGCTTTCTAAGGACAAAATCGAACTCCAG

Malus domestica genome assembly, chromosome: 1.
OU744542.1:31353463-31353482

TACTTGTTTTATCATTAAGTAACAATGCAG31353463GAGTTATGGCAACCCCTTTCTTGCTTTCTAAGGACAAAATCGAACTCCAG

Malus domestica genome assembly, chromosome: 1.
OU744953.1:30949848-30949867

TACTTGTTTTATCATTAAGTAACAATGCAG30949848GAGTTATGGCAACCCCTTTCTTGCTTTCTAAGGACAAAATCGAACTCCAG

Malus domestica genome assembly, chromosome: 1.
OU744991.1:27881200-27881219

TACTTGTTTTATCATTAAGTAACAATGCAG27881200GAGTTATGGCAACCCCTTTCTTGCTTTCTAAGGACAAAATCGAACTCCAG

Crataegus laevigata genome assembly, chromosome: 10.
OY756947.1:35663733-35663752

ATACTTGTCTTTTCATAAGTAACAATGCAG35663733GAGTTATGGCAACCCCTTTCATGCTTTCAAAGGACAAGATCGAACTTCAG

Furcula furcula genome assembly, chromosome: Z.
OU452242.1:37433427-37433446

ATTACCTACCACCTATACAGCGATCCCAAA37433427GAGTTATGGCAACCCCTTTCTTCAAATGATTAGGCTTTTGTTCTGCAGTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
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Debug Info:

0.008 | 0.008 | search_start;
0.098 | 0.089 | search_plus_done; http://172.18.8.135:50400/match?q=GAAAGGGGTTGCCATAACTC&k=0&no_gap=0&offset=0&limit=50
0.450 | 0.352 | search_minus_done; http://172.18.8.135:50400/match?q=GAGTTATGGCAACCCCTTTC&k=0&no_gap=0&offset=0&limit=47
0.465 | 0.015 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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