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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-29 13:45:54, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

GM880002B20G02 Gm-r1088 Glycine max cDNA clone Gm-r1088-700 3', mRNA sequence.
BU544433.1:360-379
GCTCATAGTTGGCATCCTATGACTAGGTTG360GAAGACCTGAGCTGCCATTCTTTCTCTCTCAGTTGTTATGTTTCCATTTA
GM880004B10C02 Gm-r1088 Glycine max cDNA clone Gm-r1088-1275 3', mRNA sequence.
BU545040.1:579-598
GCTCATAGTTGGCATCCTATGACTAGGTTG579GAAGACCTGAGCTGCCATTCTTTCTCTCTC
Glycine max cDNA clone: GMFL01-20-I02, 3'end.
BW662582.1:398-417
GCTCATAGTTGGCATCCTATGACTAGGTTG398GAAGACCTGAGCTGCCATTCTTTCTCTCTCAGTTGTTATGTTTCCATTTA
EST637724 MTUS Medicago truncatula cDNA clone MTUS-21D11, mRNA sequence.
CA920006.1:442-461
GCTCATAGTGGGCATCCTATGACTGGGTTG442GAAGACCTGAGCTGCCATTCTTGCTCTCTCATTTGTAAAACTTCCATTCA
gmrtDrNS01_27-A_M13R_G02_004.s1 Water stressed 5h segment 1 gmrtDrNS01 Glycine max cDNA 3', mRNA sequence.
CX548775.1:815-834
GCTCATAGTTGGCATCCTATGACTAGGTTG815GAAGACCTGAGCTGCCATTCTTTCTCTCTCAGTTGTTATGTTTCCATTTA
UCRVU05_CCNN15173_g1 Cowpea IT84S-2049 Mixed Tissue and Conditions cDNA Library UCRVU05-2-2 Vigna unguiculata cDNA clone CCNN15173.g1, mRNA sequence.
FG847492.1:571-590
GCTCATAGTTGGCATCCTATGACTAGGTTG571GAAGACCTGAGCTGCCATTCTTTCTCTCTCTGTTGTTAAGCTTCCATTCA
454GmaGlobSeed188926 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
FK454294.1:8-27
TAGGTTG8GAAGACCTGAGCTGCCATTCTTTCTCTCTCAGTTGTTATGTTTCCATTTA
454GmaGlobSeed262775 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
FK528143.1:8-27
TAGGTTG8GAAGACCTGAGCTGCCATTCTTTCTCTCTCAGTTGTTATGTTTCCATTTA
454GmaGlobSeed394006 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
FK659374.1:8-27
TAGGTTG8GAAGACCTGAGCTGCCATTCTTTCTCTCTCAGTTGTTATGTTTCCATTTA
454GmaGlobSeed546917 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
GD804268.1:35-54
GCTCATAGTTGGCATCCTATGACTAGGTTG35GAAGACCTGAGCTGCCATTCTTTCTCTCTCAGTTGTTATGTTTCCATTTA
454GmaGlobSeed600705 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
GD858056.1:38-57
CTATTAGTTTGGCATCCTATGACTAGGTTG38GAAGACCTGAGCTGCCATTCTTTCTCTCTCAGTTGTTATGTTTCCATTTA
454GmaGlobSeed729047 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
GD986398.1:154-173
GCTCATAGTTGGCATCCTATGACTAGGTTG154GAAGACCTGAGCTGCCATTCTTTCTCTCTCAGTTGTTATGTTTCCATTTA
CCCC12715.g1 CCCC Glycine max callus grown in dark condition Glycine max cDNA clone CCCC12715 3', mRNA sequence.
GR842743.1:398-417
GCTCATAGTTGGCATCCTATGACTAGGTTG398GAAGACCTGAGCTGCCATTCTTTCTCTCTCAGTTGTTATGTTTCCATTTA
METBN82TR JCVI-MT3 Medicago truncatula cDNA 3', mRNA sequence.
GT141078.1:598-617
GCTCATAGTGGGCATCCTATGACTGGGTTG598GAAGACCTGAGCTGCCATTCTTGCTCTCTCATTTGTAAAACTTCCATTCA
Vigna angularis mRNA, clone: VES03O22.
HX943564.1:403-422
GCTCATAGTTGGCATCCTATGACTAGGTTG403GAAGACCTGAGCTGCCATTCTTTCTCTCTCTGTTGTTAAGCTTCCATTCA
Vigna angularis mRNA, clone: VES21E12.
HX950104.1:417-436
GCTCATAGTTGGCATCCTATGACTAGGTTG417GAAGACCTGAGCTGCCATTCTTTCTCTCTCTGTTGTTAAGCTTCCATTCA
TSA: Medicago sativa subsp. falcata cultivar Wisfal FZ0_1971 mRNA sequence.
JL883171.1:493-512
GCTCATAGTGGGCATCCTATGACTGGGTTG493GAAGACCTGAGCTGCCATTCTTGCTCTCTCATTTGTAAAACTTCCATTCA
TSA: Fish metagenome RNA, contig: contig13885_C3627062, isolate: DF4107.
LA132742.1:200-219
GCTCATAGTTGGCATCCTATGACTAGGTTG200GAAGACCTGAGCTGCCATTCTTTCTCTCTCAGTTGTTATGTTTCCATTTA
Medicago truncatula clone mth2-93k16, WORKING DRAFT SEQUENCE, 35 unordered pieces.
AC229730.8:8568-8587
TGGGATAAATATGTACCTATGACTGGGTTG8568GAAGACCTGAGCTGCCATTCTTTCTCTCTCGTTTGTAAAACTTCCATTCA
Vigna unguiculata cultivar Xiabao 2 chromosome Vu09.
CP039355.1:38368043-38368062
AGGGGATAATGCGTACCTATGACTAGGTTG38368043GAAGACCTGAGCTGCCATTCTTTCTCTCTCTGTTGTTAAGCTTCCATTCA
Glycine max cultivar Williams 82 chromosome 4.
CP126429.1:53499606-53499625
AGGGGATAATGCGTACCTATGACTAGGTTG53499606GAAGACCTGAGCTGCCATTCTTTCTCTCTCAGTTGTTATGTTTCCATTTA
M.truncatula DNA sequence from clone MTH2-65F22 on chromosome 3.
CR956619.7:80398-80417
GGGGATAGATATGTACCTATGACTGGGTTG80398GAAGACCTGAGCTGCCATTCTTGCTCTCTCATTTGTAAAACTTCCATTCA
Trifolium subterraneum genome assembly, chromosome: 2.
OX637462.1:18093854-18093873
GGGGATAAGTATGTACCTATGGCTGGGTTG18093854GAAGACCTGAGCTGCCATTCTTTCTCTGTCATTTGTAAAACTTCCATTCA
Trifolium dubium genome assembly, chromosome: 15.
OX638076.1:8826814-8826833
GGGGATAAAGATATACCTATGACTGGGTTG8826814GAAGACCTGAGCTGCCATTCTTTCTCTCTCATTTGTAAAACTTCCATTCA
Trifolium fragiferum genome assembly, chromosome: 6.
OX940794.1:52841466-52841485
GGATAAAAAAATATACCTATGGCTGGGTTG52841466GAAGACCTGAGCTGCCATTCTTGCTCTCTCATTTGTAAAACTTCCATTTA
Medicago lupulina genome assembly, chromosome: 6.
OY283144.1:12159896-12159915
AGGGATAAATATGTACCTATGACTGGGTTG12159896GAAGACCTGAGCTGCCATTCTTTCTCTCTCATTTGTAAAACTTCCATTCA
Lacanobia oleracea genome assembly, chromosome: 3.
OX493388.1:3160277-3160296
TTTTACATGCATACCTTGCTTAACCTTCAA3160277GAAGACCTGAGCTGCCATTCTCTTGTTCAACTTCTCAAGGGTCAAAGAAT
Sequence 24615 from patent US 9029636.
HK933678.1:914-933
TAAATGGAAACATAACAACTGAGAGAGAAA914GAATGGCAGCTCAGGTCTTCCAACCTAGTCATAGACCATGTGCCCAAAAA
Sequence 66244 from patent US 9029636.
HK975307.1:917-936
TAAATGGAAACATAACAACTGAGAGAGAAA917GAATGGCAGCTCAGGTCTTCCAACCTAGTCATAGGATGCCAACTATGAGC
Medicago truncatula EST MtBB37B12R1 : T7 end of clone MtBB37B12 of cDNA library MtBB from symbiotic root nodules of cultivar Jemalong of Medicago truncatula (barrel medic).
AL378284.1:26-45
GGAAGTTTTACAAATGAGAGAGCAA26GAATGGCAGCTCAGGTCTTCCAACCCAGTCATAGGATGCCCACTATGAGC
sg43e07.y1 Gm-c1025 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1025-1117 5' similar to TR:Q40666 Q40666 CHILLING-INDUCIBLE PROTEIN, mRNA sequence.
AW311647.1:453-472
TAAATGGAAACATAACAACTGAGAGAGAAA453GAATGGCAGCTCAGGTCTTCCAACCTAGTCATAGGATGCCAACTATGAGC
sq01c02.y1 Gm-c1045 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1045-1851 5' similar to TR:Q40666 Q40666 CHILLING-INDUCIBLE PROTEIN, mRNA sequence.
BE556324.1:312-331
TAAATGGAAACATAACAACTGAGAGAGAAA312GAATGGCAGCTCAGGTCTTCCAACCTAGTCATAGGATGCCAACTATGAGC
NF056H06FL1F1060 Developing flower Medicago truncatula cDNA clone NF056H06FL 5', mRNA sequence.
BI270676.1:413-432
TGAATGGAAGTTTTACAAATGAGAGAGCAA413GAATGGCAGCTCAGGTCTTCCAACCCAGTCATAGGATGCCCACTATGAGC
saf07a04.y3 Gm-c1076 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1076-8 5' similar to TR:Q9XHD0 Q9XHD0 PP2A REGULATORY SUBUNIT, mRNA sequence.
BI426087.1:58-77
TAAATGGAAACATAACAACTGAGAGAGAAA58GAATGGCAGCTCAGGTCTTCCAACCTAGTCATAGGATGCCAACTATGAGC
saq33h01.y1 Gm-c1045 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1045-6865 5' similar to TR:Q9XHD0 Q9XHD0 PP2A REGULATORY SUBUNIT, mRNA sequence.
BU082522.1:398-417
TAAATGGAAACATAACAACTGAGAGAGAAA398GAATGGCAGCTCAGGTCTTCCAACCTAGTCATAGGATGCCAACTATGAGC
sar61e11.y1 Gm-c1074 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1074-6766 5' similar to TR:Q9XHD0 Q9XHD0 PP2A REGULATORY SUBUNIT, mRNA sequence.
BU578783.1:176-195
TTTTTGGAAACATAACAACTGAGAGAGAAA176GAATGGCAGCTCAGGTCTTCCAACCTAGTCATAGGATGCCAACTATGAGC
sas20a06.y1 Gm-c1080 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1080-4236 5' similar to TR:Q9XHD0 Q9XHD0 PP2A REGULATORY SUBUNIT, mRNA sequence.
BU765797.1:341-360
TAAATGGAAACATAACAACTGAGAGAGAAA341GAATGGCAGCTCAGGTCTTCCAACCTAGTCATAGGATGCCAACTATGAGC
EST644467 GESD Medicago truncatula cDNA clone GESD-31M14, mRNA sequence.
CA990959.1:443-462
TGAATGGAAGTTTTACAAATGAGAGAGCAA443GAATGGCAGCTCAGGTCTTCCAACCCAGTCATAGGATGCCCACTATGAGC
psHB003xM08f USDA-IFAFS:Expression of Phytophthora sojae genes during infection and propagation Glycine max cDNA clone sHB003M08 5, mRNA sequence.
CF806102.1:461-480
TAAATGGAAACATAACAACTGAGAGAGAAA461GAATGGCAGCTCAGGTCTTCCAACCTAGTCATAGGATGCCAACTATGAGC
sshnod81 Sesbania rostrata stem nodules Sesbania rostrata cDNA similar to mRNA for putative PP2A regulatory subunit-like protein, mRNA sequence.
CK233288.1:197-216
TCAATGGAAGTTTAGCAACTGATAGAGAAA197GAATGGCAGCTCAGGTCTTCCAACCCAGTCATAGGTTGCCAACTATGAGC
MOOFP28TR MOO Vigna unguiculata cDNA 3', mRNA sequence.
FF394775.1:16-35
GAACAGAGAGAGAAA16GAATGGCAGCTCAGGTCTTCCAACCTAGTCATAGGATGCCAACTATGAGC
MOOFP28TF MOO Vigna unguiculata cDNA 5', mRNA sequence.
FF401727.1:16-35
GAACAGAGAGAGAAA16GAATGGCAGCTCAGGTCTTCCAACCTAGTCATAGGATGCCAACTATGAGC
MOOFR35TF MOO Vigna unguiculata cDNA 5', mRNA sequence.
FF402866.1:179-198
TGAATGGAAGCTTAACAACAGAGAGAGAAA179GAATGGCAGCTCAGGTCTTCCAACCTAGTCATAGGATGCCAACTATGAGC
UCRVU05_CCNN15173_b1 Cowpea IT84S-2049 Mixed Tissue and Conditions cDNA Library UCRVU05-2-2 Vigna unguiculata cDNA clone CCNN15173.b1, mRNA sequence.
FG847491.1:512-531
TGAATGGAAGCTTAACAACAGAGAGAGAAA512GAATGGCAGCTCAGGTCTTCCAACCTAGTCATAGGATGCCAACTATGAGC
GLMDD88TR JCVI-SOY2 Glycine max cDNA 5', mRNA sequence.
FK003964.1:567-586
TAAATGGAAACATAACAACTGAGAGAGAAA567GAATGGCAGCTCAGGTCTTCCAACCTAGTCATAGGATGCCAACTATGAGC
454GmaGlobSeed44506 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
FK309874.1:13-32
CTGAGAGAGAAA13GAATGGCAGCTCAGGTCTTCCAACCTAGTCATAGGATGCCAACTATGAGC
454GmaGlobSeed61700 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
FK327068.1:53-72
TAAATGGAAACATAACAACTGAGAGAGAAA53GAATGGCAGCTCAGGTCTTCCAACCTAGTCATAGGATGCCAACTATGAGC
454GmaGlobSeed133595 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
FK398963.1:213-232
TAAATGGAAACATAACAACTGAGAGAGAAA213GAATGGCAGCTCAGGTCTTCCAACCTAGT
454GmaGlobSeed396674 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
FK662042.1:30-49
AAATGGAAACATAACAACTGAGAGAGAAA30GAATGGCAGCTCAGGTCTTCCAACCTAGTCATAGGATGCCAACTATGAGC
454GmaGlobSeed446794 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
GD704145.1:23-42
AACATAACAACTGAGAGAGAAA23GAATGGCAGCTCAGGTCTTCCAACCTAGTCATAGGATGCCAACTATGAGC
454GmaGlobSeed611495 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
GD868846.1:58-77
TAAATGGAAACATAACAACTGAGAGAGAAA58GAATGGCAGCTCAGGTCTTCCAACCTAGTCATAGGATGCCAACTATGAGC
BULK2-1_P2_D12 Chickpea drought stressed cDNA SSH library BULK2 Cicer arietinum cDNA, mRNA sequence.
HO068010.1:105-124
TGAATGGAAGTTTTACAAATGAGAGAGAAA105GAATGGCAGCTCAGGTCTTCCAACCCAGTCACAGGATGCCAACTATGAGC
TSA: Cajanus cajan cultivar UPAS 120 contig04567.UPAS mRNA sequence.
EZ622284.1:1069-1088
TGAATGGAAGCATAACAACAGAGAGAGAAC1069GAATGGCAGCTCAGGTCTTCCAACCTAGTCATAGGTTGCCAACTATGAGC
TSA: Cajanus cajan cultivar Asha contig11711.Asha mRNA sequence.
EZ659575.1:835-854
TGAATGGAAGCATAACAACAGAGAGAGAAC835GAATGGCAGCTCAGGTCTTCCAACCTAGTCATAGGTTGCCAACTATGAGC
mth4-39F9FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula.
CR505497.1:184-203
TGAATGGAAGTTTTACAAACGAGAGAGAAA184GAATGGCAGCTCAGGTCTTCCAACCCAGTCATAGGTACATATTTATCCCA
Glycine max cDNA, clone: GMFL01-25-A06.
AK245249.1:1072-1091
TAAATGGAAACATAACAACTGAGAGAGAAA1072GAATGGCAGCTCAGGTCTTCCAACCTAGTCATAGGATGCCAACTATGAGC
Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
AP015035.1:15067496-15067515
TGAATGGAAGCTTAACAACAGAGAGAGAAA15067496GAATGGCAGCTCAGGTCTTCCAACCTAGTCATAGGTACACATTATCCCCT
Medicago truncatula clone JCVI-FLMt-18C12 unknown mRNA.
BT146620.1:1009-1028
TGAATGGAAGTTTTACAAATGAGAGAGCAA1009GAATGGCAGCTCAGGTCTTCCAACCCAGTCATAGGATGCCCACTATGAGC
Cicer arietinum chromosome Ca5.
CP039335.1:45444752-45444771
TGAATGGAAGTTTTACAAATGAGAGAGAAA45444752GAATGGCAGCTCAGGTCTTCCAACCCAGTCACAGGTACATATTTATTACC
Cicer arietinum chromosome Ca5.
CP040770.1:45444756-45444775
TGAATGGAAGTTTTACAAATGAGAGAGAAA45444756GAATGGCAGCTCAGGTCTTCCAACCCAGTCACAGGTACATATTTATTACC
Trifolium repens isolate ACLI19 chromosome 03_Occ.
CP125840.1:39858376-39858395
TAAATGGAAGTTTTACAAATGAGAGAGAAA39858376GAATGGCAGCTCAGGTCTTCCAACCCAGCCATAGGTACATTTTTTATCCC
Trifolium repens isolate ACLI19 chromosome 03_Occ.
CP125840.1:50701971-50701990
TAAATGGAAGTTTTACAAATGAGAGAGAAA50701971GAATGGCAGCTCAGGTCTTCCAACCCAGCCATAGGTACATTTTTTATCCC
Trifolium repens isolate ACLI19 chromosome 03_Pall.
CP125841.1:43722564-43722583
TAAATGGAAGTTTTACAAATGAGAGAGAAA43722564GAATGGCAGCTCAGGTCTTCCAACCCAGCCATAGGTACATTTTTTATCCC
Glycine max cultivar Williams 82 chromosome 6.
CP126431.1:10686026-10686045
TAAATGGAAACATAACAACTGAGAGAGAAA10686026GAATGGCAGCTCAGGTCTTCCAACCTAGTCATAGGTACGCATTATCCCCT
Trifolium dubium genome assembly, chromosome: 3.
OX638064.1:20429801-20429820
TGAATGGAAGTTTTACAAATGAGAGAGAAA20429801GAATGGCAGCTCAGGTCTTCCAACCCAGTCATAGGTACATATTTATCCCC
Astragalus glycyphyllos genome assembly, chromosome: 1.
OY754307.1:81419651-81419670
TGAATGGAAGTATAACAACGGAGAGAGAAA81419651GAATGGCAGCTCAGGTCTTCCAACCCAGTCACAGGTACACGATTATCTCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GAAGACCTGAGCTGCCATTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GAAGACCTGAGCTGCCATTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.049 | 1.040 | search_plus_done; http://172.18.8.135:50400/match?q=GAAGACCTGAGCTGCCATTC&k=0&no_gap=0&offset=0&limit=50
2.090 | 1.041 | search_minus_done; http://172.18.8.135:50400/match?q=GAATGGCAGCTCAGGTCTTC&k=0&no_gap=0&offset=0&limit=23
2.116 | 0.026 | cgi_end;

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