GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 01:02:35, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Dianthus caryophyllus mRNA, clone: CES07M01, 5' end sequence.
FY385028.1:468-487
GTTAATGGATTAGTCCCTAATACTGTCGTC468GAAGATGTTTTCGGGGTTGAGGATGAGGAGGGAAATAACAAAGGGCACTC
TSA: Dianthus caryophyllus mRNA, contig: CAK09.627.C1.
FX297815.1:467-486
GTTAATGGATTAGTCCCTAATACTGTCGTC467GAAGATGTTTTCGGGGTTGAGGATGAGGAGGGAAATAACAAAGGGCACTC
Urtica urens genome assembly, chromosome: 2.
OY282521.1:10927969-10927988
TCGAAAAGCTTGTAATCTTCGTGTGAACCC10927969GAAGATGTTTTCGGGGTTGAGCAAACCTTGCACGGTCGAACTGGTCGCTT
Melangyna quadrimaculata genome assembly, chromosome: 1.
OX439483.1:66331905-66331924
GCTTTTTACTCGAACCAAATCATTTTTTTT66331905TCAACCCCGAAAACATCTTCTAAGCAATGCAGGGCGGTTGCCGATGATAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GAAGATGTTTTCGGGGTTGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GAAGATGTTTTCGGGGTTGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.171 | 0.163 | search_plus_done; http://172.18.8.135:50400/match?q=GAAGATGTTTTCGGGGTTGA&k=0&no_gap=0&offset=0&limit=50
0.189 | 0.017 | search_minus_done; http://172.18.8.135:50400/match?q=TCAACCCCGAAAACATCTTC&k=0&no_gap=0&offset=0&limit=47
0.189 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).