GGGenome | Results

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2025-04-17 03:29:28, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Coregonus sp. 'balchen' genome assembly, chromosome: 12.
LR778264.1:50551380-50551401

AATAAACCTAGCCAGAGAATCAAAGGGAGA50551380GAAGCTGACAGACGAAGAAGTTGAGGAGTGAGTAAAGATGTATTACAGTATT

Sequence 306 from patent US 9163255.
HL270017.1:361-382

GCTCCGCCATGTTATGACGAATCTCGGTGA361GAAGCTGACAGACGAAGAAGTTGATGAGATGATTCGCGAGGCTGATGTTGAT

Sequence 306 from Patent WO2011024207.
JA857233.1:361-382

GCTCCGCCATGTTATGACGAATCTCGGTGA361GAAGCTGACAGACGAAGAAGTTGATGAGATGATTCGCGAGGCTGATGTTGAT

Ljirnpest20-634-g12 Ljirnp Lambda HybriZap two-hybrid library Lotus japonicus cDNA clone LP634-20-g12 5' similar to mRNA for calmodulin (AI967619), mRNA sequence.
AW164147.1:165-186

GCTCCGCCATGTCATGACCAACCTTGGTGA165GAAGCTGACAGACGAAGAAGTTGATGAGATGATCCGCGAGGCTGATGTTGAT

Trifolium pratense cDNA clone:RCE01603.
BB903763.1:388-409

GCTCCGCCATGTCATGACAAATCTCGGTGA388GAAGCTGACAGACGAAGAAGTTGATGAGATGATTCGTGAGGCCGATGTGGAT

Trifolium pratense cDNA clone:RCE28283.
BB922037.1:394-415

GCTCCGCCATGTCATGACAAATCTCGGTGA394GAAGCTGACAGACGAAGAAGTTGATGAGATGATTCGTGAGGCCGATGTGGAT

Trifolium pratense cDNA clone:RCE32454.
BB924184.1:405-426

GCTCCGCCATGTCATGACAAATCTCGGTGA405GAAGCTGACAGACGAAGAAGTTGATGAGATGATTCGTGAGGCCGATGTGGAT

IpCGBr3_1_E01_21 Ictalurus punctatus Brain1 microsatellite enriched Ictalurus punctatus cDNA clone IpCGBr3_1_E01_21_27Sep00_005 5', mRNA sequence.
BM495639.1:505-526

ACTGCGTCACGTCATGACTAACCTCNGTGA505GAAGCTGACAGACGAAGAAGTTGATGAGATGATT

AMM1153 Ammopiptanthus mongolicus leaf cDNA library Ammopiptanthus mongolicus cDNA, mRNA sequence.
EL680396.1:377-398

GCTCCGCCATGTCATGACTAACCTTGGTGA377GAAGCTGACAGACGAAGAAGTTGATGAGATGATCCGCGAGGCTGATGTTGAT

mh1_0033_H11 Drought-stressed chickpea leave library Cicer arietinum cDNA clone mh1_0033_H11 5', mRNA sequence.
FE673289.1:407-428

GCTCCGCCATGTTATGACGAATCTCGGTGA407GAAGCTGACAGACGAAGAAGTTGATGAGATGATTCGCGAGGCTGATGTTGAT

Trifolium repens mRNA, clone: WCC18e06_083, unspecified EST.
FY460333.1:396-417

GCTCCGCCATGTCATGACAAATCTCGGTGA396GAAGCTGACAGACGAAGAAGTTGATGAGATGATTCGTGAGGCCGATGTTGAC

Trifolium repens mRNA, clone: WCC25p20_032, unspecified EST.
FY463097.1:392-413

GCTCCGCCATGTCATGACAAATCTTGGTGA392GAAGCTGACAGACGAAGAAGTTGATGAGATGATTCGTGAGGCCGATGTTGAT

CAABI13TF ICC1882 field drought stressed root cDNA library Cicer arietinum cDNA clone CAABI13TF 5', mRNA sequence.
GR392790.1:419-440

GCTCCGCCATGTTATGACGAATCTCGGTGA419GAAGCTGACAGACGAAGAAGTTGATGAGATGATTCGCGAGGCTGATGTTGAT

CaF1_JIE_05_B_08 Early immune responsive suppression subtracted cDNA libraries of Chickpea (Cicer arietinum cv. JG-62) wilt Cicer arietinum cDNA clone CaF1_JIE_05_B_08, mRNA sequence.
GR912038.1:385-406

GCTCCGCCATGTTATGACGAATCTCGGTGA385GAAGCTGACAGACGAAGAAGTTGATGAGATGATTCGCGAGGCTGATGTTGAT

BULK1-1_P5_D11 Chickpea drought stressed cDNA SSH library BULK1 Cicer arietinum cDNA, mRNA sequence.
HO067546.1:163-184

GCTCCGCCATGTTATGACGAATCTCGGTGA163GAAGCTGACAGACGAAGAAGTTGATGAGATGATTCGCGAGGCTGATGTTGAT

mh-2a_0012_C11 Chickpea leave library Cicer arietinum cDNA clone mh-2a_0012_C11 5', mRNA sequence.
HS109383.1:423-444

GCTCCGCCATGTTATGACGAATCTCGGTGA423GAAGCTGACAGACGAAGAAGTTGATGAGATGATTCGCGAGGCTGATGTTGAT

Am008_C01 Ammopiptanthus mongolicus cold- and drought-responsive library Ammopiptanthus mongolicus cDNA clone SDQ008_C01 5', mRNA sequence.
JZ389038.1:448-469

GCTCCGCCATGTCATGACTAACCTTGGTGA448GAAGCTGACAGACGAAGAAGTTGATGAGATGATCCGCGAGGCTGATGTTGAT

Am014_F09 Ammopiptanthus mongolicus cold- and drought-responsive library Ammopiptanthus mongolicus cDNA clone SDQ014_F09 5', mRNA sequence.
JZ389491.1:454-475

GCTCCGCCATGTCATGACTAACCTTGGTGA454GAAGCTGACAGACGAAGAAGTTGATGAGATGATCCGCGAGGCTGATGTTGAT

TSA: Thermobia domestica DMPC15568833 mRNA sequence.
JT501956.1:3-24

GA3GAAGCTGACAGACGAAGAAGTTGAGCAACTATTATCAGGTCAGGAGGACTCT

Lotus japonicus B-129 DNA, chromosome 1, complete sequence.
AP022629.1:7781423-7781444

GCTCCGCCATGTCATGACCAACCTTGGTGA7781423GAAGCTGACAGACGAAGAAGTTGATGAGATGATCCGCGAGGCTGATGTTGAT

Lotus japonicus clone JCVI-FLLj-21C24 unknown mRNA.
BT145847.1:429-450

GCTCCGCCATGTCATGACCAACCTTGGTGA429GAAGCTGACAGACGAAGAAGTTGATGAGATGATCCGCGAGGCTGATGTTGAT

Trifolium subterraneum genome assembly, chromosome: 6.
OX637466.1:40500904-40500925

GCTCCGCCATGTCATGACAAATCTCGGTGA40500904GAAGCTGACAGACGAAGAAGTTGATGAGATGATTCGTGAGGCCGATGTTGAT

Cicer arietinum mRNA for CaM protein.
Y09853.1:440-461

GCTCCGCCATGTTATGACGAATCTCGGTGA440GAAGCTGACAGACGAAGAAGTTGATGAGATGATTCGCGAGGCTGATGTTGAT

Trifolium pratense cDNA clone:RCE27795.
BB921610.1:332-353

ATCCACATCGGCCTCACGAATCATCTCATC332AACTTCTTCGTCTGTCAGCTTCTCACCGAGATTTGTCATGACATGGCGGAGC

Trifolium pratense cDNA clone:RCE29957.
BB922624.1:432-453

ATCCACATCGGCCTCACGAATCATCTCATC432AACTTCTTCGTCTGTCAGCTTCTCACCGAGATTTGTCATGACATGGCGGAGC

LJGAW11TO JCVI-LJ1 Lotus japonicus cDNA 3', mRNA sequence.
GO015925.1:405-426

ATCAACATCAGCCTCGCGGATCATCTCATC405AACTTCTTCGTCTGTCAGCTTCTCACCAAGGTTGGTCATGACATGGCGGAGC

CAABF43TF ICC1882 field drought stressed root cDNA library Cicer arietinum cDNA clone CAABF43TF 5', mRNA sequence.
GR392603.1:467-488

ATCAACATCAGCCTCGCGAATCATCTCATC467AACTTCTTCGTCTGTCAGCTTCTCACCGAGATTCGTCATAACATGGCGG

ICC4958_Field_CAAAT68TF ICC4958 field drought stressed root cDNA library Cicer arietinum cDNA clone ICC4958_Field_CAAAT68TF 5', mRNA sequence.
GR398139.1:497-518

ATCAACATCAGCCTCGCGAATCATCTCATC497AACTTCTTCGTCTGTCAGCTTCTCACCGAGATTCGTCATAACATGGCGGAGC

AR2-1_8048-042_B06 Chickpea drought stressed cDNA SSH library AR2 Cicer arietinum cDNA, mRNA sequence.
HO064317.1:474-495

ATCAACATCAGCCTCGCGAATCATCTCATC474AACTTCTTCGTCTGTCAGCTTCTCACCGAGATTCGTCATAACATGGGCGGAG

Lupinus angustifolius cultivar Tanjil voucher WA chromosome LG-16.
CP023128.1:16832264-16832285

ATCACCATCAGCCTCGCGAATCATCTCATC16832264AACTTCTTCGTCTGTCAGCTTCTCACCAAGATTTGTCATGACATGGCGGAGC

Cicer arietinum chromosome Ca2.
CP039332.1:11000794-11000815

ATCAACATCAGCCTCGCGAATCATCTCATC11000794AACTTCTTCGTCTGTCAGCTTCTCACCGAGATTCGTCATAACATGGCGGAGC

Cicer arietinum chromosome Ca2.
CP040767.1:11000790-11000811

ATCAACATCAGCCTCGCGAATCATCTCATC11000790AACTTCTTCGTCTGTCAGCTTCTCACCGAGATTCGTCATAACATGGCGGAGC

Trifolium repens isolate ACLI19 chromosome 03_Occ.
CP125840.1:11907526-11907547

GTCAACATCGGCCTCACGAATCATCTCATC11907526AACTTCTTCGTCTGTCAGCTTCTCACCGAGATTTGTCATGACATGGCGGAGC

Trifolium repens isolate ACLI19 chromosome 03_Pall.
CP125841.1:13758923-13758944

ATCAACATCGGCCTCACGAATCATCTCATC13758923AACTTCTTCGTCTGTCAGCTTCTCACCAAGATTTGTCATGACATGGCGGAGC

Data Export:

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Debug Info:

0.009 | 0.009 | search_start;
1.146 | 1.137 | search_plus_done; http://172.18.8.135:50400/match?q=GAAGCTGACAGACGAAGAAGTT&k=0&no_gap=0&offset=0&limit=50
1.636 | 0.491 | search_minus_done; http://172.18.8.135:50400/match?q=AACTTCTTCGTCTGTCAGCTTC&k=0&no_gap=0&offset=0&limit=27
1.644 | 0.007 | cgi_end;

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