GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 09:16:31, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KBrH049F15R KBrH, Brassica rapa HindIII BAC library Brassica rapa subsp. pekinensis genomic clone KBrH049F15, genomic survey sequence.
DX911925.1:581-600
TCAGATCTGAGTGGCATCACGGACATTTGA581GAATAAATATCCCCAGCTGCCGAGTTAGATCCATAGCAAACTTCATAGCT
Brassica rapa subsp. pekinensis clone KBrB126H02, complete sequence.
CU928182.1:5414-5433
TCAGATCTGAGTGGCATCACGGACATTTGA5414GAATAAATATCCCCAGCTGCCGAGTTAGATCCATAGCAAACTCCATAGCT
Brassica napus cultivar Xiang5A chromosome 7.
CP123882.1:6815720-6815739
TCAGATCTGAGTGGCATCACGGACATTTGA6815720GAATAAATATCCCCAGCTGCCGAGTTAGATCCATAGCAAACTCCATAGCT
Tenthredo distinguenda genome assembly, chromosome: 5.
OX384534.1:1189981-1190000
AAGAACGGAGGGACGGGAAGGGAATGGGAC1189981GAATAAATATCCCCAGCTGCGTGTTGTTTGCGTGTTTCTTCGGAATCCAT
Macrophya alboannulata genome assembly, chromosome: 1.
OX451206.1:1511195-1511214
GCGAAGGAAGGAGAAATAAGGGAATGGGAC1511195GAATAAATATCCCCAGCTGCGTGTTGTTTGCGTGTTTCTTCGGAATCCAT
Macrophya annulata genome assembly, chromosome: 3.
OZ001259.1:2104936-2104955
AAGAAAGATGGAAAAATAAGGGAATGGGAC2104936GAATAAATATCCCCAGCTGCGTGTTGTTTGCGTGTTTCTTCGGAATCCAT
Athalia cordata genome assembly, chromosome: 1.
OZ010625.1:34929114-34929133
TGGAAGTTTGAGGGCGGAAGGGAATGAGAC34929114GAATAAATATCCCCAGCTGCGTGTTGTTTGCGTGTTTCTTTGGAATCCAT
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_31022.
FX719442.1:3-22
CG3GCAGCTGGGGATATTTATTCTCAAATGTCCGTGATGCCACTCAGATCTGA
Prunus dulcis DNA, pseudomolecule Pd05.
AP019301.1:990791-990810
ACGGAACCAATAGGAAGTTTTTATAGCATT990791GCAGCTGGGGATATTTATTCATGTGTTTCTACAAAGAGGGCATGGTTGAA
Brassica napus aintegumenta 2 mRNA, complete cds.
DQ211970.1:217-236
AGCTATGGAGTTTGCTATGGATCTAACTCG217GCAGCTGGGGATATTTATTCTCAAATGTCCGTGATGCCACTCAGATCTGA
Brassica napus genome assembly, chromosome: A08.
HG994362.1:19689592-19689611
AGCTATGGAGTTTGCTATGGATCTAACTCG19689592GCAGCTGGGGATATTTATTCTCAAATGTCCGTGATGCCACTCAGATCTGA
Brassica rapa genome, scaffold: A08.
LR031575.1:18671863-18671882
AGCTATGGAGTTTGCTATGGATCTAACTCG18671863GCAGCTGGGGATATTTATTCTCAAATGTCCGTGATGCCACTCAGATCTGA
Brassica rapa genome assembly, chromosome: A08.
LS974624.2:24410270-24410289
AGCTATGGAGTTTGCTATGGATCTAACTCG24410270GCAGCTGGGGATATTTATTCTCAAATGTCCGTGATGCCACTCAGATCTGA
Tenthredo notha genome assembly, chromosome: 2.
OU611907.1:21442078-21442097
ATGGATTCCGAAGAAACACGCAAACAACAC21442078GCAGCTGGGGATATTTATTCGTCCCATTCCCTTCCGTTCGTTCTTCTTCA
Athalia rosae genome assembly, chromosome: 2.
OU795001.1:1928847-1928866
ATGGATTCCAAAGAAACACGCAAACAACAC1928847GCAGCTGGGGATATTTATTCGTCCCATTCCCCTTCCGCCCTCAAACTTCC
Tenthredo mesomela genome assembly, chromosome: 3.
OX031015.1:48590777-48590796
ATGGATTCCGAAGAAACACGCAAACAACAC48590777GCAGCTGGGGATATTTATTCGTCCCATTCCCTTCCGTCCGTTCTTCTTTG
Rhogogaster chlorosoma genome assembly, chromosome: 3.
OX101799.1:27648553-27648572
ATGGATTCCGAAGAAACACGCAAACAACAC27648553GCAGCTGGGGATATTTATTCGTCGCCCATTCCCTTCCGTCCGTTCTTCTT
Phymatocera aterrima genome assembly, chromosome: 4.
OY720662.1:2879322-2879341
ATGGATTCCGAAGAAACACGCAAACAACAC2879322GCAGCTGGGGATATTTATTCGTCCCATTCCAAGTTCCCTTATGCGCGTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GAATAAATATCCCCAGCTGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GAATAAATATCCCCAGCTGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.126 | 0.118 | search_plus_done; http://172.18.8.135:50400/match?q=GAATAAATATCCCCAGCTGC&k=0&no_gap=0&offset=0&limit=50
0.197 | 0.071 | search_minus_done; http://172.18.8.135:50400/match?q=GCAGCTGGGGATATTTATTC&k=0&no_gap=0&offset=0&limit=43
0.204 | 0.007 | cgi_end;

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