GGGenome | Results

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2025-04-14 00:19:20, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Solanum melongena mRNA, clone: ROT03G11, 3'end, expressed in root at 7d after germination.
FS057776.1:153-173

TTGTTAGCCAAAGAAAAAATAGTTGTAGGT153GACACTCCCCTACTTCCACCTAAGTACCATTTCTTCATCATCTCAACAACA

Solanum melongena chalcone isomerase 2 (CHI2) mRNA, complete cds.
ON911770.1:558-578

TGTTGTTGAGATGATGAAGAAATGGTACTT558AGGTGGAAGTAGGGGAGTGTCACCTACAACTATTTCTTCTTTGGCTAACAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.353 | 0.344 | search_plus_done; http://172.18.8.135:50400/match?q=GACACTCCCCTACTTCCACCT&k=0&no_gap=0&offset=0&limit=50
0.438 | 0.084 | search_minus_done; http://172.18.8.135:50400/match?q=AGGTGGAAGTAGGGGAGTGTC&k=0&no_gap=0&offset=0&limit=49
0.438 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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