GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 05:37:34, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar Flame chromosome 1.
CP141910.1:40157273-40157292
GCAGACGCAGCAGCAGCAGCAGCAGAAGGA40157273GACATGGTGACTGACAGTGCCAAAACTTGGGTCAAACAAGTAAGGGAAGC
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141953.1:27947275-27947294
GACGCTAAAGCAGCAGCAGCAGCAGAAGGA27947275GACATGGTGACTGACAGTGCCAAAACTTGGGTCAAACAAGTAAGGGAAGC
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141953.1:27971124-27971143
GACGCTAAAGCAGCAGCAGCAGCAGAAGGA27971124GACATGGTGACTGACAGTGCCAAAACTTGGGTCAAACAAGTAAGGGAAGC
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141970.1:29570910-29570929
GACGCTAAAGCAGCAGCAGCAGCAGAAGGA29570910GACATGGTGACTGACAGTGCCAAAACTTGGGTCAAACAAGTAAGGGAAGC
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141970.1:29651930-29651949
GATGCTAAAGCAGCAGCAGCAGCAGAAGGT29651930GACATGGTGACTGACAGTGCCAAAACTTGGGTCAAACAAGTAAGGGAAGC
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143358.1:29234219-29234238
GACGCAGCAGCAGCAGCAGCAGCAGAAGGA29234219GACATGGTGACTGACAGTGCCAAAACTTGGGTCAAACAAGTAAGGGAAGC
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143358.1:29267381-29267400
GCTAAAGCAGCAGCAGCAGCAGCAGAAGGA29267381GACATGGTGACTGACAGTGCCAAAACTTGGGTCAAACAAGTAAGGGAAGC
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143375.1:27962751-27962770
GCAGACGCAGCAGCAGCAGCAGCAGAAGGA27962751GACATGGTGACTGACAGTGCCAAAACTTGGGTCAAACAAGTAAGGGAAGC
Malus sylvestris genome assembly, chromosome: 1.
OU696503.1:25976731-25976750
GCTAAAGCAGCAGCAGCAGCAGCAGAAGGA25976731GACATGGTGACTGACAGTGCCAAAACCTGGGTCAAGCAAGTAAGGGAAGC
Malus domestica genome assembly, chromosome: 1.
OU696677.1:26067650-26067669
GCTAAAGCAGCAGCAGCAGCAGCAGAAGGA26067650GACATGGTGACTGACAGTGCCAAAACTTGGGTCAAACAAGTAAGGGAAGC
Malus domestica genome assembly, chromosome: 1.
OU744542.1:29782312-29782331
GCTAAAGCAGCAGCAGCAGCAGCAGAAGGA29782312GACATGGTGACTGACAGTGCCAAAACCTGGGTCAAGCAAGTAAGGGAAGC
Malus domestica genome assembly, chromosome: 1.
OU744953.1:29156598-29156617
GACGCTAAAGCAGCAGCAGCAGCAGAAGGA29156598GACATGGTGACTGACAGTGCCAAAACTTGGGTCAAACAAGTAAGGGAAGC
Malus domestica genome assembly, chromosome: 1.
OU744991.1:26255986-26256005
GCTAAAGCAGCAGCAGCAGCAGCAGAAGGA26255986GACATGGTGACTGACAGTGCCAAAACCTGGGTCAAGCAAGTAAGGGAAGC
Nematostella vectensis genome assembly, chromosome: 8.
OW051992.1:5979441-5979460
TTTCTAAGCAAAGAGCCCCCGCTCTCGTGT5979441GACATGGTGACTGACAGTGCATTCCAGCAGCTAGAACATGCTACTGGCGG
Xyrichtys novacula genome assembly, chromosome: 21.
OY660884.1:15472151-15472170
CGACATGACTGTTTGCCGTGAGCTATGTGT15472151GCACTGTCAGTCACCATGTCCTCACATATTACACTTTACCTGCACCGTCA
Malus x robusta genome assembly, chromosome: 12.
OY720336.1:4152043-4152062
GCTTCCCTTACTTGTTTGACCCAAGTTTTG4152043GCACTGTCAGTCACCATGTCACCTTCTGCTGCTGCTGCTGCTTTAGCATC
Malus x robusta genome assembly, chromosome: 12.
OY720336.1:4357302-4357321
GCTTCCCTTACTTGTTTGACCCAAGTTTTG4357302GCACTGTCAGTCACCATGTCTCCTTCTGCTGCTGCTGCTGCGTCTGCATC
Malus x robusta genome assembly, chromosome: 12.
OY720336.1:4388025-4388044
GCTTCCCTTACTTGTTTGACCCAAGTTTTG4388025GCACTGTCAGTCACCATGTCTCCTTCTGCTGCTGCTGCTGCTGCTTTAGC
Crataegus laevigata genome assembly, chromosome: 14.
OY756951.1:4320300-4320319
GCTTCCCTTACTTGTTTGACCCAAGTTTTG4320300GCACTGTCAGTCACCATGTCTCCTTCTGCTGCTGCTGCTGCTTTGGCATC
Pyrus communis genome assembly, chromosome: 16.
OY757083.1:3320555-3320574
GCTTCCCTTACTTGTTCGACCCAAGTTTTG3320555GCACTGTCAGTCACCATGTCTCCTTCTGCTGCTGCTGCTTTAGCATCTGC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GACATGGTGACTGACAGTGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GACATGGTGACTGACAGTGC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.092 | 0.083 | search_plus_done; http://172.18.8.135:50400/match?q=GACATGGTGACTGACAGTGC&k=0&no_gap=0&offset=0&limit=50
0.125 | 0.033 | search_minus_done; http://172.18.8.135:50400/match?q=GCACTGTCAGTCACCATGTC&k=0&no_gap=0&offset=0&limit=36
0.129 | 0.004 | cgi_end;

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