GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2026-01-09 02:16:22, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Musa acuminata AAA Group Unigene14899_B1 mRNA sequence.
JV360469.1:294-313
GTCAGCCGCTCGCCGGAGACGTGCGATCCC294GACATTGCGCCCTTCTACATACACACCATCCATCCCCGCTTCAACGCCGC
TSA: Musa acuminata AAA Group Unigene100205_NK1 mRNA sequence.
JV432519.1:302-321
GTCAGCCGCTCGCCGGAGACGTGCGATCCC302GACATTGCGCCCTTCTACATACACACCATCCATCCCCGCTTCAACGCCGC
Musa acuminata subsp. malaccensis isolate AA chromosome 5.
CP126374.1:6604793-6604812
CTCAGCCGCTCGCCGGAGACGTGCGATCCC6604793GACATTGCGCCCTTCTACATACACACCATCCATCCCCGCTTCAACGCCGC
Musa acuminata subsp. malaccensis isolate AA chromosome 16.
CP126385.1:6592335-6592354
CTCAGCCGCTCGCCGGAGACGTGCGATCCC6592335GACATTGCGCCCTTCTACATACACACCATCCATCCCCGCTTCAACGCCGC
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A05.
HG996470.1:6815439-6815458
CTCAGCCGCTCGCCGGAGACGTGCGATCCC6815439GACATTGCGCCCTTCTACATACACACCATCCATCCCCGCTTCAACGCCGC
Musa schizocarpa genome assembly, chromosome: S05.
LS990919.1:7419153-7419172
CTCAGCCGCTCGCCGGAGACGTGCGATCCC7419153GACATTGCGCCCTTCTACATACACACCATCCATCCCCGCTTCAACGCCGC
Musa banksii genome assembly, chromosome: 5.
OZ184656.1:6915959-6915978
GTCAGCCGCTCGCCGGAGACGTGCGATCCC6915959GACATTGCGCCCTTCTACATACACACCATCCATCCCCGCTTCAACGCCGC
Musa textilis genome assembly, chromosome: 5.
OZ184668.1:12334777-12334796
CTCAGCCACTCGCCGGAGACGTGCGATCCC12334777GACATTGCGCCCTTCTACATCCACACCATCCATCCCCGCTTCAACGCCGC
Musa acuminata var. zebrina genome assembly, chromosome: 5.
OZ184679.1:7209664-7209683
CTCAGCCGCTCGCCGGAGACGTGCGATCCC7209664GACATTGCGCCCTTCTACATACACACCATCCATCCCCGCTTCAACGCCGC
Musa hybrid cultivar genome assembly, chromosome: 5.
OZ185484.1:6989509-6989528
CTCAGCCGCTCGCCGGAGACGTGCGATCCC6989509GACATTGCGCCCTTCTACATACACACCATCCATCCCCGCTTCAACGCCGC
Musa hybrid cultivar genome assembly, chromosome: 5.
OZ185496.1:6727562-6727581
GTCAGCCGCTCGCCGGAGACGTGCGATCCC6727562GACATTGCGCCCTTCTACATACACACCATCCATCCCCGCTTCAACGCCGC
Musa troglodytarum cultivar karat chromosome 5.
CP097507.1:9321763-9321782
GCGGCGTTGAAGCGGGGATGGATGGTGTGG9321763ATGTAGAAGGGCGCAATGTCGGGATCGCACGTCTCCGGCGAGTGGCTGAG
Musa acuminata subsp. burmannicoides genome assembly, chromosome: 5.
OZ193590.1:6442367-6442386
GCGGCGTTGAAGCGGGGATGGATGGTGTGT6442367ATGTAGAAGGGCGCAATGTCGGGATCGCACGTCTCCGGCGAGCGGCTGAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GACATTGCGCCCTTCTACAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GACATTGCGCCCTTCTACAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.384 | 0.375 | search_plus_done; http://172.18.8.135:50800/match?q=GACATTGCGCCCTTCTACAT&k=0&no_gap=0&offset=0&limit=50
0.505 | 0.121 | search_minus_done; http://172.18.8.135:50800/match?q=ATGTAGAAGGGCGCAATGTC&k=0&no_gap=0&offset=0&limit=39
0.506 | 0.002 | cgi_end;

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