GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-20 13:32:51, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Raphanus sativus genome assembly, chromosome: 2.
LR778311.1:23285319-23285338
AGAGAATTGTATATTAATTAGTAAGTGGTG23285319GACCCGAGATCTACTGTAATCCACCTTTTTAGAAGCAAATCAGCAAAGAA
Brassica napus gln gene for plastid glutamine synthetase, exons 1-12.
AJ271909.1:1717-1736
TCTTTGCTAATCTGGCTTCTAAAAAGGTGG1717ATTACAGTAGATCTCGGGTCCACCACTTACTAATTAATCTATAGTTCTCT
Brassica napus cultivar Xiang5A chromosome 6.
CP123881.1:50020974-50020993
TCTTTGCTAATTTGGCTTCTAAAAAGGTGG50020974ATTACAGTAGATCTCGGGTCCACCACGTACTTATTAATCTATAATTCTCT
Brassica napus cultivar Xiang5A chromosome 14.
CP123889.1:13407615-13407634
TCTTTGCTAATTTGGCTTCTAAAAAGGTGG13407615ATTACAGTAGATCTCGGGTCCACCACTTACTAATTAATCTATAGTTCTCT
Brassica napus genome assembly, chromosome: A04.
HG994358.1:7781473-7781492
TCTTTGCTAATCTGGCTTCTAAAAAGGTGG7781473ATTACAGTAGATCTCGGGTCCACCACTTACTAATTAATCTATAGTTCTCT
Brassica napus genome assembly, chromosome: C04.
HG994368.1:43717087-43717106
TCTTTGCTAATTTGGCTTCTAAAAAGGTGG43717087ATTACAGTAGATCTCGGGTCCACCACGTACTTATTAATCTATAATTCTCT
Brassica rapa genome, scaffold: A04.
LR031576.1:7058383-7058402
TCTTTGCTAATCTGGCTTCTAAAAAGGTGG7058383ATTACAGTAGATCTCGGGTCCACCACTTACTAATTAATCTATAGTTCTCT
Brassica oleracea HDEM genome, scaffold: C4.
LR031873.1:43145555-43145574
TCTTTGCTAATTTGGCTTCTAAAAAGGTGG43145555ATTACAGTAGATCTCGGGTCCACCACGTACTTATTAATCTATAATTCTCT
Brassica rapa genome assembly, chromosome: A04.
LS974620.2:7302081-7302100
TCTTTGCTAATCTGGCTTCTAAAAAGGTGG7302081ATTACAGTAGATCTCGGGTCCACCACTTACTAATTAATCTATAGTTCTCT
Raphanus sativus genome assembly, chromosome: 4.
OY743210.1:30365182-30365201
TTCTTTGCTGATTTGCTTCTAAAAAGGTGG30365182ATTACAGTAGATCTCGGGTCCACCACTTACTAATTAATATACAATTCTCT
Pseudoips prasinana genome assembly, chromosome: 21.
OX621255.1:6409249-6409268
GCTACATATTCCACTGTGGTTCAGTTTATC6409249ATTACAGTAGATCTCGGGTCTTTCCATAGCGTTTAGTCTTTTGGGGCGAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GACCCGAGATCTACTGTAAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GACCCGAGATCTACTGTAAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.099 | 0.090 | search_plus_done; http://172.18.8.135:50400/match?q=GACCCGAGATCTACTGTAAT&k=0&no_gap=0&offset=0&limit=50
0.139 | 0.040 | search_minus_done; http://172.18.8.135:50400/match?q=ATTACAGTAGATCTCGGGTC&k=0&no_gap=0&offset=0&limit=49
0.146 | 0.007 | cgi_end;

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