GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 04:25:40, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 12.
CP124708.1:101631027-101631048
CTTGTAGAATCATCAATTGTTGTGGTGTTG101631027GACTCCATCTTGGTCTAGGCATATTGAAGAAAACTTTTGTTATTTGTTTTGT
Solanum lycopersicum Micro-Tom DNA, chromosome 11, draft genome sequence.
AP028945.1:61417119-61417140
AAAAGAGTAAAAAGTTGTATAATATTGAAT61417119ATGCCTAGACCAAGATGGAGTCCAACACCACAACAACTTATGATTCTACAAG
Solanum lycopersicum cultivar I-3 chromosome 11.
CP023767.1:55983290-55983311
AAAAGAGTAAAAAGTTGTATAATATTGAAT55983290ATGCCTAGACCAAGATGGAGTCCAACACCACAACAACTTATGATTCTACAAG
Solanum tuberosum cultivar P8 chromosome 11.
CP046684.1:44886731-44886752
AGAAAAACTTTTTTRTTTTGAATCTTGAAT44886731ATGCCTAGACCAAGATGGAGTCCAACACCACAACARCTTATGATTYTACAAG
Solanum tuberosum cultivar MSH/14-112 chromosome 11.
CP046691.1:44886882-44886903
AGAAAAACTTTTTTATTTTGAATCTTGAAT44886882ATGCCTAGACCAAGATGGAGTCCAACACCACAACARCTTATGATTCTACAAG
Solanum pinnatisectum cultivar CGN17745 chromosome 11.
CP047563.1:44859748-44859769
AGAAAAACTTTTTTATTTTGAATCTTGAAT44859748ATGCCTAGACCAAGATGGAGTCCAACACCACAACAGCTTATGATTTTACAAG
Solanum tuberosum cultivar Solyntus chromosome 11.
CP055244.1:56456709-56456730
AGAATAACTTTTTTATTTTGAATCTTGAAT56456709ATGCCTAGACCAAGATGGAGTCCAACACCACAACAACTTATGATTCTACAAG
Solanum verrucosum cultivar 11H23 chromosome 11.
CP133622.1:44932726-44932747
AAAAAAACTTTTTTATTTTGAATCTTGAAT44932726ATGCCTAGACCAAGATGGAGTCCAACACCACAACAACTTATGATTCTACAAG
Solanum pennellii chromosome ch11, complete genome.
HG975450.1:65855694-65855715
AAAAATAAAAAAAGTTGTATAATCTTGAAT65855694ATGCCTAGACCAAGATGGAGTCCAACACCACAACAACTTATGATTCTACAAG
Solanum lycopersicum chromosome ch11, complete genome.
HG975523.1:53063990-53064011
AAAAGAGTAAAAAGTTGTATAATATTGAAT53063990ATGCCTAGACCAAGATGGAGTCCAACACCACAACAACTTATGATTCTACAAG
Solanum lycopersicum genome assembly, chromosome: 11.
OU640354.1:56893275-56893296
AAAAGAGTAAAAAGTTGTATAATATTGAAT56893275ATGCCTAGACCAAGATGGAGTCCAACACCACAACAACTTATGATTCTACAAG
Solanum dulcamara genome assembly, chromosome: 6.
OX359257.1:29401751-29401772
CAAAACGAAAATTGAAACTTCATCTTGAAT29401751ATGCCTAGACCAAGATGGAGTCCAACACCACAACAACTTATGATTCTACAAG
Solanum dulcamara genome assembly, chromosome: 9.
OX359260.1:56909869-56909890
CAAAACAAAAATTGAAACTTCATCTTGAAT56909869ATGCCTAGACCAAGATGGAGTCCAACACCACAACAACTTATGATTCTACAAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GACTCCATCTTGGTCTAGGCAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GACTCCATCTTGGTCTAGGCAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.108 | 0.099 | search_plus_done; http://172.18.8.135:50400/match?q=GACTCCATCTTGGTCTAGGCAT&k=0&no_gap=0&offset=0&limit=50
0.140 | 0.032 | search_minus_done; http://172.18.8.135:50400/match?q=ATGCCTAGACCAAGATGGAGTC&k=0&no_gap=0&offset=0&limit=49
0.148 | 0.008 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).