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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 02:26:55, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

0153436 Brassica napus Etiolated seedlings (Uni-ZAP) Brassica napus cDNA, mRNA sequence.
EV172011.1:284-304
TGATGTGTAAAACTATTGGCGTGGCGAGCC284GAGACCGAGGTAGAGGAAAGGGCAGGGTGACAAAACAACTTCGTCTCTTTC
BR104401 defected leaf cDNA library KHLD Brassica rapa subsp. pekinensis cDNA clone KHLD-09H06 3', mRNA sequence.
EX120571.1:133-153
TGATGTGTAAAACTATTGGCGTGGCGAGCC133GAGACCGAGGTAGAGGAAAGGGCAGGGTGACAAAACAACTTCGTCTCTTTC
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_7281.
FX710837.1:117-137
TGATGTGTAAAACTATTGGCGTGGCGAGCC117GAGACCGAGGTAGAGGAAAGGGCAGGGTGACAAAACAACTTCGTCTCTTTC
Brassica napus genome assembly, chromosome: C05.
HG994369.1:14902544-14902564
TGATGTGTAAAACTATTGGCGTGGCGAGCC14902544GAGACCGAGGTAGAGGAAAGGGCAGGGTGACAAAACAACTTCGTCTCTTTC
BNQA_UP_042_F12_01OCT2003_086 Brassica napus BNQA Brassica napus cDNA 5', mRNA sequence.
EE551031.1:182-202
GAAAGAGACGAAGTTGTTTTGTCACCCTGC182CCTTTCCTCTACCTCGGTCTCGGCTCGCCACGCCAATAGTTTTACACATCA
0153403 Brassica napus Etiolated seedlings (Uni-ZAP) Brassica napus cDNA, mRNA sequence.
EV171995.1:217-237
GAAAGAGACGAAGTTGTTTTGTCACCCTGC217CCTTTCCTCTACCTCGGTCTCGGCTCGCCACGCCAATAGTTTTACACATCA
BR120965 root cDNA library KHRT Brassica rapa subsp. pekinensis cDNA clone KHRT-80D09 5', mRNA sequence.
EX137135.1:237-257
GAAAGAGACGAAGTTGTTTTGTCACCCTGC237CCTTTCCTCTACCTCGGTCTCGGCTCGCCACGCCAATAGTTTTACACATCA
BNAOV1GH_T3_069_F05_14SEPT2007_037 BNAOV1GH Brassica napus cDNA 5', mRNA sequence.
GR447723.1:243-263
GAAAGAGACGAAGTTGTTTTGTCACCCTGC243CCTTTCCTCTACCTCGGTCTCGGCTCGCCACGCCAATAGTTTTACACATCA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_2180.
FX754129.1:1285-1305
GAAAGAGACGAAGTTGTTTTGTCACCCTGC1285CCTTTCCTCTACCTCGGTCTCGGCTCGCCACGCCAATAGTTTTACACATCA
Brassica napus cultivar Xiang5A chromosome 11.
CP123886.1:44303799-44303819
GAAAGAGACGAAGTTGTTTTGTCACCCTGC44303799CCTTTCCTCTACCTCGGTCTCGGCTCGCCACGCCAATAGTTTTACACATCA
Brassica rapa genome, scaffold: A09.
LR031568.1:43434611-43434631
GAAAGAGACGAAGTTGTTTTGTCACCCTGC43434611CCTTTCCTCTACCTCGGTCTCGGCTCGCCACGCCAATAGTTTTACACATCA
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:53884275-53884295
GAAAGAGACGAAGTTGTTTTGTCACCCTGC53884275CCTTTCCTCTACCTCGGTCTCGGCTCGCCACGCCAATAGTTTTACACATCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GAGACCGAGGTAGAGGAAAGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GAGACCGAGGTAGAGGAAAGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.226 | 0.217 | search_plus_done; http://172.18.8.135:50400/match?q=GAGACCGAGGTAGAGGAAAGG&k=0&no_gap=0&offset=0&limit=50
0.553 | 0.328 | search_minus_done; http://172.18.8.135:50400/match?q=CCTTTCCTCTACCTCGGTCTC&k=0&no_gap=0&offset=0&limit=46
0.558 | 0.005 | cgi_end;

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