GGGenome | Results

2025-04-11 01:37:46, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

EG-A01_007_G08 Oil palm normal apex Lambda Zap Library Elaeis guineensis cDNA, mRNA sequence.
CN599664.1:278-299

AAACCCAGCCCTCTCGGACCGCGGCCAGGC278GAGACGCCTTAGTTCCGCCAGTCCCCGTCCGACGCGCCACCGCCGCCCCTCG

OPMF02067 Elaeis guineensis mature flower 26 cm Elaeis guineensis cDNA clone OPN6WK_W1032.seq T3, mRNA sequence.
EL685826.1:268-289

GAACCCAGCCCTCTCGGACCGCGGCCAGGC268GAGACGCCTTAGTTCCGCCAGTCCCCGTCCGACGCGCCGCCGCCGCCCCTCG

OPVM00177 Elaeis guineensis shoot apex Elaeis guineensis cDNA clone 83-G12-T3.seq, mRNA sequence.
EL686571.1:294-315

GAACCCAGCCCTCTCGGACCGCGGCCAGGC294GAGACGCCTTAGTTCCGCCAGTCCCCGTCCGACGCGCCGCCGCCGCCCCTCG

OPR00953 Elaeis guineensis root Elaeis guineensis cDNA clone PLATE213-D5-T3.seq, mRNA sequence.
EL690920.1:274-295

GAACCCAGCCCTCTCGGACCGCGGCCAGGC274GAGACGCCTTAGTTCCGCCAGTCCCCGTCCGACGCGCCGCCGCCGCCCCTCG

pOP-EO07835_EST_C_1_pSK_SK EO (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EO07835 5', mRNA sequence.
EY409063.1:272-293

GAACCCAGCCCTCTCGGACCGCGGCCAGGC272GAGACGCCTTAGTTCCGCCAGTCCCCGTCCGACGCGCCGCCGCCGCCCCTCG

pOP-EO06801_EST_C_1_pSK_SK EO (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EO06801 5', mRNA sequence.
EY409561.1:267-288

GAACCCAGCCCTCTCGGACCGCGGCCAGGC267GAGACGCCTTAGTTCCGCCAGTCCCCGTCCGACGCGCCGCCGCCGCCCCTCG

pOP-EO04090_EST_C_1_pSK_SK EO (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EO04090 5', mRNA sequence.
EY409570.1:268-289

GAACCCAGCCCTCTCGGACCGCGGCCAGGC268GAGACGCCTTAGTTCCGCCAGTCCCCGTCCGACGCGCCGCCGCCGCCCCTCG

pOP-EO07342_EST_C_1_pSK_SK EO (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EO07342 5', mRNA sequence.
EY409802.1:273-294

GAACCCAGCCCTCTCGGACCGCGGCCAGGC273GAGACGCCTTAGTTCCGCCAGTCCCCGTCCGACGCGCCGCCGCCGCCCCTCG

pOP-EO02711_EST_C_1_pSK_SK EO (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EO02711 5', mRNA sequence.
EY409875.1:270-291

GAACCCAGCCCTCTCGGACCGCGGCCAGGC270GAGACGCCTTAGTTCCGCCAGTCCCCGTCCGACGCGCCGCCGCCGCCCCTCG

pOP-EO06622_EST_C_1_pSK_SK EO (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EO06622 5', mRNA sequence.
EY410227.1:267-288

GAACCCAGCCCTCTCGGACCGCGGCCAGGC267GAGACGCCTTAGTTCCGCCAGTCCCCGTCCGACGCGCCGCCGCCGCCCCTCG

pOP-EO05735_EST_C_1_pSK_SK EO (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EO05735 5', mRNA sequence.
EY412300.1:273-294

GAACCCAGCCCTCTCGGACCGCGGCCAGGC273GAGACGCCTTAGTTCCGCCAGTCCCCGTCCGACGCGCCGCCACCAATTAGGT

pOP-EO04216_EST_C_1_pSK_SK EO (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EO04216 5', mRNA sequence.
EY412808.1:268-289

GAACCCAGCCCTCTCGGACCGCGGCCAGGC268GAGACGCCTTAGTTCCGCCAGTCCCCGTCCGACGCGCCGCCGCCGCCCCTCG

Elaeis guineensis EST, clone (6lib)_isotig02323.
LM626231.1:467-488

GAACCCAGCCCTCTCGGACCGCGGCCAGGC467GAGACGCCTTAGTTCCGCCAGTCCCCGTCCGACGCGCCGCCGCCGCCCCTCG

EG-F01_004_H05 Oil palm female inflorescence Lambda Zap Library Elaeis guineensis cDNA, mRNA sequence.
CN600840.1:341-362

CGAGGGGCGGCGGCGNNNCGTCGGACGGGG341ACTGGCGGAACTAAGGCGTCTCGCCTGGCCGCGGNCCGNNNGGGCTGGGTTT

EoEST0570 Oil palm mesocarp-tissue cDNA Entry Library Elaeis oleifera cDNA clone Mo17-519 5' similar to glycine-rich RNA binding protein 1, mRNA sequence.
EL595539.1:491-512

CGAGGGGCGGCGGCGGCGCGTCGGACGGGG491ACTGGCGGAACTAAGGCGTCTCGCCTGGCCGCGGTCCGAGAGGGCTGGGTTT

EoEST0614 Oil palm mesocarp-tissue cDNA Entry Library Elaeis oleifera cDNA clone Mo17-567 5' similar to Glycine-rich RNA binding protein 1, mRNA sequence.
EL608601.1:513-534

CGAGGGGCGGCGGCGGCGCGTCGGACGGGG513ACTGGCGGAACTAAGGCGTCTCGCCTGGCCGCGGTCCGAGAGGGCTGGGTTT

OPYF00020 Elaeis guineensis young flower 4-6 cm Elaeis guineensis cDNA clone 128-B09-T3.seq, mRNA sequence.
EL680982.1:513-534

CGAGGGGCGGCGGCGGCGCGTCGGACGGGG513ACTGGCGGAACTAAGGCGTCTCGCCTGGCCGCGGTCCGAGAGGGCTGGGTTT

OPYF00028 Elaeis guineensis young flower 4-6 cm Elaeis guineensis cDNA clone 128-C07-T3.seq, mRNA sequence.
EL680990.1:520-541

CGAGGGGCGGCGGCGGCGCGTCGGACGGGG520ACTGGCGGAACTAAGGCGTCTCGCCTGGCCGCGGTCCGAGAGGGCTGGGTTT

OPYF00104 Elaeis guineensis young flower 4-6 cm Elaeis guineensis cDNA clone 146-A11-T3.seq, mRNA sequence.
EL681056.1:514-535

CGAGGGGCGGCGGCGGCGCGTCGGACGGGG514ACTGGCGGAACTAAGGCGTCTCGCCTGGCCGCGGTCCGAGAGGGCTGGGTTT

OPYF00157 Elaeis guineensis young flower 4-6 cm Elaeis guineensis cDNA clone 146-F06-T3.seq, mRNA sequence.
EL681104.1:146-167

CGAGGGGCGGCGGCGGCGCGTCGGACGGGG146ACTGGCGGAACTAAGGCGTCTCGCCTGGCCGCGGTCCGAGAGGGCTGGGTTT

OPYF00491 Elaeis guineensis young flower 4-6 cm Elaeis guineensis cDNA clone 175-F12-T3.seq, mRNA sequence.
EL681419.1:528-549

CGAGGGGCGGCGGCGGCGCGTCGGACGGGG528ACTGGCGGAACTAAGGCGTCTCGCCTGGCCGCGGTCCGAGAGGGCTGGGTTT

OPYF00566 Elaeis guineensis young flower 4-6 cm Elaeis guineensis cDNA clone 179-D4-T3.seq, mRNA sequence.
EL681489.1:513-534

CGAGGGGCGGCGGCGGCGCGTCGGACGGGG513ACTGGCGGAACTAAGGCGTCTCGCCTGGCCGCGGTCCGAGAGGGCTGGGTTT

OPYF00855 Elaeis guineensis young flower 4-6 cm Elaeis guineensis cDNA clone 190-D6-T3.seq, mRNA sequence.
EL681765.1:519-540

CGAGGGGCGGCGGCGGCGCGTCGGACGGGG519ACTGGCGGAACTAAGGCGTCTCGCCTGGCCGCGGTCCGAGAGGGCTGGGTTT

OPYF00856 Elaeis guineensis young flower 4-6 cm Elaeis guineensis cDNA clone 190-D7-T3.seq, mRNA sequence.
EL681766.1:521-542

CGAGGGGCGGCGGCGGCGCGTCGGACGGGG521ACTGGCGGAACTAAGGCGTCTCGCCTGGCCGCGGTCCGAGAGGGCTGGGTTT

OPYF00946 Elaeis guineensis young flower 4-6 cm Elaeis guineensis cDNA clone 191-D2-T3.seq, mRNA sequence.
EL681855.1:521-542

CGAGGGGCGGCGGCGGCGCGTCGGACGGGG521ACTGGCGGAACTAAGGCGTCTCGCCTGGCCGCGGTCCGAGAGGGCTGGGTTT

OPYF01270 Elaeis guineensis young flower 4-6 cm Elaeis guineensis cDNA clone 198-G5-T3.seq, mRNA sequence.
EL682171.1:463-484

CGAGGGGCGGCGGCGGCGCGTCGGACGGGG463ACTGGCGGAACTAAGGCGTCTCGCCTGGCCGCGGTCCGAGAGGGCTGGGTTT

OPYF01410 Elaeis guineensis young flower 4-6 cm Elaeis guineensis cDNA clone 200-C5-T3.seq, mRNA sequence.
EL682308.1:529-550

CGAGGGGCGGCGGCGGCGCGTCGGACGGGG529ACTGGCGGAACTAAGGCGTCTCGCCTGGCCGCGGTCCGAGAGGGCTGGGTTT

OPYF01529 Elaeis guineensis young flower 4-6 cm Elaeis guineensis cDNA clone PLATE-205-E4-T3.seq, mRNA sequence.
EL682416.1:521-542

CGAGGGGCGGCGGCGGCGCGTCGGACGGGG521ACTGGCGGAACTAAGGCGTCTCGCCTGGCCGCGGTCCGAGAGGGCTGGGTTT

OPYF01577 Elaeis guineensis young flower 4-6 cm Elaeis guineensis cDNA clone SUE1-A07-T3.seq, mRNA sequence.
EL682463.1:527-548

CGAGGGGCGGCGGCGGCGCGTCGGACGGGG527ACTGGCGGAACTAAGGCGTCTCGCCTGGCCGCGGTCCGAGAGGGCTGGGTTT

OPYF01939 Elaeis guineensis young flower 4-6 cm Elaeis guineensis cDNA clone CMC_C382.seq, mRNA sequence.
EL682795.1:508-529

CGAGGGGCGGCGGCGGCGCGTCGGACGGGG508ACTGGCGGAACTAAGGCGTCTCGCCTGGCCGCGGTCCGAGAGGGCTGGGTTT

OPYF01976 Elaeis guineensis young flower 4-6 cm Elaeis guineensis cDNA clone CMC_C552.seq, mRNA sequence.
EL682824.1:521-542

CGAGGGGCGGCGGCGGCGCGTCGGACGGGG521ACTGGCGGAACTAAGGCGTCTCGCCTGGCCGCGGTCCGAAAGGCTGGGTTTA

OPYF02171 Elaeis guineensis young flower 4-6 cm Elaeis guineensis cDNA clone CMC_L1040.seq, mRNA sequence.
EL682985.1:516-537

CGAGGGGCGGCGGCGGCGCGTCGGACGGGG516ACTGGCGGAACTAAGGCGTCTCGCCTGGCCGCGGTCCGAGANGGCTGGGTTT

OPYF03142 Elaeis guineensis young flower 4-6 cm Elaeis guineensis cDNA clone MF89.seq, mRNA sequence.
EL683731.1:351-372

CGAGGGGCGGCGGCGGCGCGTCGGACGGGG351ACTGGCGGAACTAAGGCGTCTCGCCTGGCCGCGGTCCGAGAGGGCTGGGTTT

OPMF00657 Elaeis guineensis mature flower 26 cm Elaeis guineensis cDNA clone 122-H08-T3.seq, mRNA sequence.
EL684419.1:528-549

CGAGGGGCGGCGGCGGCGCGTCGGACGGGG528ACTGGCGGAACTAAGGCGTCTCGCCTGGCCGCGGTCCGAGAGGGCTGGGTTC

OPMF00659 Elaeis guineensis mature flower 26 cm Elaeis guineensis cDNA clone 122-H10-T3.seq, mRNA sequence.
EL684421.1:511-532

CGAGGGGCGGCGGCGGCGCGTCTGACGGGG511ACTGGCGGAACTAAGGCGTCTCGCCTGGCCGCGGTCCGAGAGGGCTGGGTTC

OPMF00685 Elaeis guineensis mature flower 26 cm Elaeis guineensis cDNA clone 123-B12-T3.seq, mRNA sequence.
EL684447.1:453-474

CGAGGGGCGGCGGCGGCGCGTCGGACGGGG453ACTGGCGGAACTAAGGCGTCTCGCCTGGCCTCGGTCCGAGAGGGCTGGGTTC

OPMF00752 Elaeis guineensis mature flower 26 cm Elaeis guineensis cDNA clone 123-H07-T3.seq, mRNA sequence.
EL684514.1:472-493

CGAGGGGCGGCGGCGGCGCGTCTGACGGGG472ACTGGCGGAACTAAGGCGTCTCGCCTGGCCGCGGTCCGAGAGGGCTGGGTTC

OPMF01694 Elaeis guineensis mature flower 26 cm Elaeis guineensis cDNA clone OPN6SG_S332.seq T3, mRNA sequence.
EL685454.1:518-539

CGAGGGGCGGCGGCGGCGCGTCGGACGGGG518ACTGGCGGAACTAAGGCGTCTCGCCTGGCCGCGGTCCGAGAGGGCTGGGT

OPMF02077 Elaeis guineensis mature flower 26 cm Elaeis guineensis cDNA clone OPN6WK_W1042.seq T3, mRNA sequence.
EL685835.1:509-530

CGAGGGGCGGTGGCGGCGCGTCGGACGGGG509ACTGGCGGAACTAAGGCGTCTCGCCTGGCCGCGGTCCGAGAGGGCTGGGTTC

OPMF02086 Elaeis guineensis mature flower 26 cm Elaeis guineensis cDNA clone OPN6WK_W1052.seq T3, mRNA sequence.
EL685844.1:508-529

CGAGGGGCGGCGGCGGCGCGTCGGACGGGG508ACTGGCGGAACTAAGGCGTCTCGCCTGGC

OPMF02103 Elaeis guineensis mature flower 26 cm Elaeis guineensis cDNA clone OPN6WK_W1071.seq T3, mRNA sequence.
EL685861.1:520-541

CGAGGGGCGGCGGCGGCGCGTCGGACGGGG520ACTGGCGGAACTAAGGCGTCTCGCCTGGCCGCGGTCCGAGAGGGCTGGGTTC

OPMF02145 Elaeis guineensis mature flower 26 cm Elaeis guineensis cDNA clone OPN6WK_W1116.seq T3, mRNA sequence.
EL685903.1:517-538

GAGTGGGCGGCGGCGGCGCGTCGGACGGGG517ACTGGCGGAACTAAGGCGTCTCGCCTGGCCGCGGTCCGAGATGGCTGGGTTC

OPMF02532 Elaeis guineensis mature flower 26 cm Elaeis guineensis cDNA clone OPN6WK_W826.seq T3, mRNA sequence.
EL686289.1:520-541

CGAGGGGCGGCGGCGGCGCGTCGGACGGGG520ACTGGCGGAACTAAGGCGTCTCGCCTGGCCGCGGTCCGAGAGGGCTGGGTTC

OPMF02589 Elaeis guineensis mature flower 26 cm Elaeis guineensis cDNA clone OPN6WK_W889.seq T3, mRNA sequence.
EL686346.1:311-332

CGAGGGGCGGCGGCGGCGCGTCGGACGGGG311ACTGGCGGAACTAAGGCGTCTCGCCTGGCCGCGGTCCGAGAGGGCTGGGTTC

OPMF02626 Elaeis guineensis mature flower 26 cm Elaeis guineensis cDNA clone OPN6WK_W925.seq T3, mRNA sequence.
EL686383.1:311-332

CGAGGGGCGGCGGCGGCGCGTCGGACGGGG311ACTGGCGGAACTAAGGCGTCTCGCCTGGCCGCGGTCCGAGAGGGCTGGGTTC

OPMF02636 Elaeis guineensis mature flower 26 cm Elaeis guineensis cDNA clone OPN6WK_W937.seq T3, mRNA sequence.
EL686393.1:312-333

CGAGGGGCGGCGGCGGCGCGTCGGACGGGG312ACTGGCGGAACTAAGGCGTCTCGCCTGGCCGCGGTCCGAGAGGGCTGGGTTC

OPVM00242 Elaeis guineensis shoot apex Elaeis guineensis cDNA clone 84-E08-T3.seq, mRNA sequence.
EL686636.1:518-539

CGAGGGGCGGCGGCGGCGCGTCGGACGGGG518ACTGGCGGAACTAAGGCGTCTCGCCTGGCCGCGGTCCGAGAGGGCTGGGTTC

OPVM00302 Elaeis guineensis shoot apex Elaeis guineensis cDNA clone 85-B10-T3.seq, mRNA sequence.
EL686696.1:490-511

CGAGGGGCGGCGGCGGCGCGTCGGACGGGG490ACTGGCGGAACTAAGGCGTCTCGCCTGGCCGCGGTCCGAGAGGGCTGGGTTC

OPVM00341 Elaeis guineensis shoot apex Elaeis guineensis cDNA clone 85-F01-T3.seq, mRNA sequence.
EL686735.1:522-543

CGAGGGGCGGCGGCGGCGCGTCGGACGGGG522ACTGGCGGAACTAAGGCGTCTCGCCTGGCCGCGGTCCGAGAGGGCTGGGTTC

OPVM00997 Elaeis guineensis shoot apex Elaeis guineensis cDNA clone OPN0XX_B48-5.seq, mRNA sequence.
EL687375.1:505-526

CGAGGGGCGGCGGCGGCGCGTCGGACGGGG505ACTGGCGGAACTAAGGCGTCTCGCCTGCCGCGGTCCGAAAGGCTGGTTCAAG

TSA: Elaeis guineensis isotig00001.Elguifruit mRNA sequence.
JO087245.1:738-759

CGAGGGGCGGCGGCGGCGCGTCGGACGGGG738ACTGGCGGAACTAAGGCGTCTCGCCTGGCCGCGGTCCGAGAGGGCTGGGTTT

TSA: Elaeis guineensis isotig00002.Elguifruit mRNA sequence.
JO087246.1:737-758

CGAGGGGCGGCGGCGGCGCGTCGGACGGGG737ACTGGCGGAACTAAGGCGTCTCGCCTGGCCGCGGTCCGAGAGGGCTGGGTTT

TSA: Elaeis guineensis isotig00003.Elguifruit mRNA sequence.
JO087247.1:737-758

CGAGGGGCGGCGGCGGCGCGTCGGACGGGG737ACTGGCGGAACTAAGGCGTCTCGCCTGGCCGCGGTCCGAGAGGGCTGGGTTT

TSA: Elaeis guineensis isotig00004.Elguifruit mRNA sequence.
JO087248.1:477-498

CGAGGGGCGGCGGCGGCGCGTCGGACGGGG477ACTGGCGGAACTAAGGCGTCTCGCCTGGCCGCGGTCCGAGAGGGCTGGGTTT

TSA: Elaeis guineensis isotig00005.Elguifruit mRNA sequence.
JO087249.1:737-758

CGAGGGGCGGCGGCGGCGCGTCGGACGGGG737ACTGGCGGAACTAAGGCGTCTCGCCTGGCCGCGGTCCGAGAGGGCTGGGTTT

TSA: Elaeis guineensis isotig00006.Elguifruit mRNA sequence.
JO087250.1:737-758

CGAGGGGCGGCGGCGGCGCGTCGGACGGGG737ACTGGCGGAACTAAGGCGTCTCGCCTGGCCGCGGTCCGAGAGGGCTGGGTTT

TSA: Elaeis guineensis isotig00007.Elguifruit mRNA sequence.
JO087251.1:737-758

CGAGGGGCGGCGGCGGCGCGTCGGACGGGG737ACTGGCGGAACTAAGGCGTCTCGCCTGGCCGCGGTCCGAGAGGGCTGGGTTT

TSA: Elaeis guineensis isotig00008.Elguifruit mRNA sequence.
JO087252.1:477-498

CGAGGGGCGGCGGCGGCGCGTCGGACGGGG477ACTGGCGGAACTAAGGCGTCTCGCCTGGCCGCGGTCCGAGAGGGCTGGGTTT

TSA: Elaeis guineensis isotig00009.Elguifruit mRNA sequence.
JO087253.1:477-498

CGAGGGGCGGCGGCGGCGCGTCGGACGGGG477ACTGGCGGAACTAAGGCGTCTCGCCTGGCCGCGGTCCGAGAGGGCTGGGTTT

TSA: Elaeis guineensis isotig00010.Elguifruit mRNA sequence.
JO087254.1:477-498

CGAGGGGCGGCGGCGGCGCGTCGGACGGGG477ACTGGCGGAACTAAGGCGTCTCGCCTGGCCGCGGTCCGAGAGGGCTGGGTTT

TSA: Elaeis guineensis isotig00011.Elguifruit mRNA sequence.
JO087255.1:737-758

CGAGGGGCGGCGGCGGCGCGTCGGACGGGG737ACTGGCGGAACTAAGGCGTCTCGCCTGGCCGCGGTCCGAGAGGGCTGGGTTT

TSA: Elaeis guineensis isotig00012.Elguifruit mRNA sequence.
JO087256.1:477-498

CGAGGGGCGGCGGCGGCGCGTCGGACGGGG477ACTGGCGGAACTAAGGCGTCTCGCCTGGCCGCGGTCCGAGAGGGCTGGGTTT

Elaeis guineensis clone estEgSNP48 hypothetical protein mRNA, complete cds.
JX438718.1:316-337

CGAGGGGCGGCGGCGGCGCGTCGGACGGGG316ACTGGCGGAACTAAGGCGTCTCGCCTGGCCGCGGTCCGAGAGGGCTGGGTTT

Elaeis guineensis glycine-rich RNA-binding protein (GRP) mRNA, complete cds.
KF516928.1:535-556

CGAGGGGCGGCGGCGGCGCGTCGGACGGGG535ACTGGCGGAACTAAGGCGTCTCGCCTGGCCGCGGTCCGAGAGGGCTGGGTTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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Debug Info:

0.008 | 0.008 | search_start;
1.180 | 1.172 | search_plus_done; http://172.18.8.135:50400/match?q=GAGACGCCTTAGTTCCGCCAGT&k=0&no_gap=0&offset=0&limit=50
3.615 | 2.435 | search_minus_done; http://172.18.8.135:50400/match?q=ACTGGCGGAACTAAGGCGTCTC&k=0&no_gap=0&offset=0&limit=37
3.648 | 0.033 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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