GGGenome | Results

2025-04-11 02:15:25, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

UCRCS01_01cc03_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cc03, mRNA sequence.
CB290559.1:610-629

TCGAATGATCAAATATGCGGCATTCGGGTT610GAGAGCACCACCCAAAACATGATGCAAATTACGAATTTGTGTAACTAACT

UCRPT01_02ad10_b1 Poncirus trifoliata CTV-challenged cDNA library - AGI Citrus trifoliata cDNA clone UCRPT01_02ad10, mRNA sequence.
CD574902.1:606-625

TCGAATGATCAAATACGCGGCATTCGGGTT606GAGAGCACCACCCAAAACATGATGCAAATTACGAATTTGTGTAACTAACT

UCRPT01_0008O05_f Poncirus trifoliata CTV-challenged cDNA library - AGI2 Citrus trifoliata cDNA clone PT_6Ea0008O05, mRNA sequence.
CV706800.1:599-618

TCGAATGATCAAATACGCGGCATTCGGGTT599GAGAGCACCACCCAAAACATGATGCAAATTACGAATTTGTGTAACTAACT

UCRPT01_0011F15_f Poncirus trifoliata CTV-challenged cDNA library - AGI2 Citrus trifoliata cDNA clone PT_6Ea0011F15, mRNA sequence.
CV708453.1:564-583

TCGAATGATCAAATACGCGGCATTCGGGTT564GAGAGCACCACCCAAAACATGATGCAAATTACGAATTTGTGTAACTAACT

UCRPT01_0013B15_f Poncirus trifoliata CTV-challenged cDNA library - AGI2 Citrus trifoliata cDNA clone PT_6Ea0013B15, mRNA sequence.
CV709589.1:715-734

TCGAATGATCAAATACGCGGCATTCGGGTT715GAGAGCACCACCCAAAACATGATGCAAATTACGAATTTGTGTAACTAACT

UCRPT01_0015L10_f Poncirus trifoliata CTV-challenged cDNA library - AGI2 Citrus trifoliata cDNA clone PT_6Ea0015L10, mRNA sequence.
CV711315.1:570-589

TCGAATGATCAAATACGCGGCATTCGGGTT570GAGAGCACCACCCAAAACATGATGCAAATTACGAATTTGTGTAACTAACT

UCRPT01_0016I18_f Poncirus trifoliata CTV-challenged cDNA library - AGI2 Citrus trifoliata cDNA clone PT_6Ea0016I18, mRNA sequence.
CV711842.1:570-589

TCGAATGATCAAATACGCGGCATTCGGGTT570GAGAGCACCACCCAAAACATGATGCAAATTACGAATTTGTGTAACTAACT

UCRPT01_0016M05_f Poncirus trifoliata CTV-challenged cDNA library - AGI2 Citrus trifoliata cDNA clone PT_6Ea0016M05, mRNA sequence.
CV711984.1:554-573

TCGAATGATCAAATACGCGGCATTCGGGTT554GAGAGCACCACCCAAAACATGATGCAAATTACGAATTTGTGTAACTAACT

UCRPT01_0016N21_f Poncirus trifoliata CTV-challenged cDNA library - AGI2 Citrus trifoliata cDNA clone PT_6Ea0016N21, mRNA sequence.
CV712052.1:585-604

TCGAATGATCAAATACGCGGCATTCGGGTT585GAGAGCACCACCCAAAACATGATGCAAATTACGAATTTGTGTAACTAACT

UCRCS04_2_002D05_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T3_D05, mRNA sequence.
CV884278.1:578-597

TCGAATGATCAAATATGCGGCATTCGGGTT578GAGAGCACCACCCAAAACATGATGCAAATTACGAATTTGTGTAACTAACT

UCRCS04_2_01B03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_01_T3_B03, mRNA sequence.
CV885793.1:585-604

TCGAATGATCAAATATGCGGCATTCGGGTT585GAGAGCACCACCCAAAACATGATGCAAATTACGAATTTGTGTAACTAACT

UCRCS07_17A01_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-17A01-B1-1-4.g, mRNA sequence.
CX044346.1:574-593

TCGAATGATCAAATATGCGGCATTCGGGTT574GAGAGCACCACCCAAAACATGATGCAAATTACGAATTTGTGTAACTAAC

UCRCS08_46A04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-46A04-A8-1-5.b, mRNA sequence.
CX075624.1:588-607

TCGAATGATCAAATACGCGGCATTCGGGTT588GAGAGCACCACCCAAAACATGATGCAAATTACGAATTTGTGTAACTAACT

C19008B06T7 FlavFrSub1 Citrus clementina x Citrus tangerina cDNA clone C19008B06, mRNA sequence.
CX307529.1:55-74

TCGAATGATCAAATATGAGGTATTCGGGTT55GAGAGCACCACCCAAAACATGATGCAAATTACGAATTTGTGTAACTAACT

UCRPT01_5_003_E08_T7 Poncirus trifoliata CTV-challenged cDNA library - UCRPT01-UCR2 Citrus trifoliata cDNA clone UCRPT01_003_T7_E08, mRNA sequence.
CX542919.1:599-618

TCGAATGATCAAATACGCGGCATTCGGGTT599GAGAGCACCACCCAAAACATGATGCAAATTACGAATTTGTGTAACTAACT

UCRPT01_5_003_H09_T7 Poncirus trifoliata CTV-challenged cDNA library - UCRPT01-UCR2 Citrus trifoliata cDNA clone UCRPT01_003_T7_H09, mRNA sequence.
CX542983.1:592-611

TCGAATGATCAAATACGCGGCATTCGGGTT592GAGAGCACCACCCAAAACATGATGCAAATTACGAATTTGTGTAACTAACT

UCRPT02_41A01_b Poncirus trifoliata Roots with Iron Deficiency - UCRPT02-UCR1 Citrus trifoliata cDNA clone UCRPT02-41A01-B2-1-6.b, mRNA sequence.
CX639467.1:595-614

TCGAATGATCAAATACGCGGCATTCGGGTT595GAGAGCACCACCCAAAACATGATGCAAATTACGAATTTGTGTAACTAACT

UCRPT02_74C12_b Poncirus trifoliata Roots with Iron Deficiency - UCRPT02-UCR1 Citrus trifoliata cDNA clone UCRPT02-74C12-F23-5.b, mRNA sequence.
CX644487.1:612-631

TCGAATGATCAAATACGCGGCATTCGGGTT612GAGAGCACCACCCAAAACATGATGCAAATTACGAATTTGTGTAACTAACT

UCRCA01_02M24_f Bark of Madame Vinous Sweet Orange Scion on Standard Sour Orange Rootstock, Citrus Tristeza Virus Challenged - UCRCA01 Citrus aurantium cDNA clone CA_SEa0002M24, mRNA sequence.
DN622941.1:562-581

TCGAATGATCAAATATGCGGCATTCGGGTT562GAGAGCACCACCCAAAACATGATGCACATTACGAATTTGTGTAACTAACT

PT11-C1-900-030-A07-CT.F Poncirus trifoliata leaf, greenhouse plant Citrus trifoliata cDNA, mRNA sequence.
EY812590.1:587-606

TCGAATGATCAAATACGCGGCATTCGGGTT587GAGAGCACCACCCAAAACATGATGCAAATTACNAATTTGTGTAACTAACT

Quercus robur leave EST, clone LG0AAA15YK03RM1, similar to METB_ARATH Cystathionine gamma-synthase, chloroplast precursor -lyase). - Arabidopsis thaliana.
FP029812.1:680-699

TCGGAGGATCAGGTATGCGGCATTCGGGTT680GAGAGCACCACCCAAAACATGATGCAAAGTACGAACTTCTGTGACCAACT

Quercus robur root EST, clone LG0AAD14YC22RM1, similar to METB_ARATH Cystathionine gamma-synthase, chloroplast precursor -lyase). - Arabidopsis thaliana.
FP073301.1:666-685

TCGGAGGATCAGGTATGCGGCATTCGGGTT666GAGAGCACCACCCAAAACATGATGCAAAGTACGAACTTCTGTGACCAACT

Ziziphus jujuba cultivar Dongzao chromosome 4.
CP134454.1:29718085-29718104

GCTTAAAGATGACAGATGGCTTACCGGGTT29718085GAGAGCACCACCCAAAACATGATGCAAATTACGAACTTCTGATACCAATT

Swietenia macrophylla isolate HCNGB_00002344 chromosome 26.
CP135577.1:3184547-3184566

GTCTGATTAAAACAGATCACTCACTGGGTT3184547GAGAGCACCACCCAAAACATGATGCAAATTACGAATTTGTGTAACCAACT

Malus hybrid cultivar cultivar Flame chromosome 9.
CP141918.1:31055795-31055814

ATATAACCCACAAACATGACTCACCGGGTT31055795GAGAGCACCACCCAAAACATGATGCAAAGTACGAATTTCTGAAATCAATT

Malus hybrid cultivar cultivar Flame chromosome 9.
CP141935.1:31929670-31929689

ATATAACCCACAAACATGACTCACCGGGTT31929670GAGAGCACCACCCAAAACATGATGCAAAGTACGAATTTCTGAAATCAATT

Malus hybrid cultivar cultivar Royalty chromosome 6.
CP141958.1:30738533-30738552

ATATAACCCACAAACATGACTCACCGGGTT30738533GAGAGCACCACCCAAAACATGATGCAAAGTACGAATTTCTGAAATCAATT

Malus hybrid cultivar cultivar Royalty chromosome 6.
CP141975.1:32055610-32055629

ATATAACCCACAAACATGACTCACCGGGTT32055610GAGAGCACCACCCAAAACATGATGCAAAGTACGAATTTCTGAAATCAATT

Sambucus nigra genome assembly, chromosome: 1.
OX422207.1:782431615-782431634

TCGATCGCGTTATCATGGGACCCCCAAATT782431615GAGAGCACCACCCAAAACATAGAAAATCCGCACTTAGGCTTGAAAATGCG

Citrus sinensis genome assembly, chromosome: 9.
OY754326.1:506607-506626

AGACTGATTAATACATTTACTCACCGGGTT506607GAGAGCACCACCCAAAACATGATGCAAATTACGAATTTGTGTAACTAACT

CGF1004482_A01 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IVF_A01 5', mRNA sequence.
CK937781.1:353-372

AGTTAGTTACACAAATTCGTAATTTGCATC353ATGTTTTGGGTGGTGCTCTCAACCCGAATGCCGCGTATTTGATCATTCGA

UCRCS06_0006E13_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006E13, mRNA sequence.
CN192058.1:218-237

AGTTAGTTACACAAATTCGTAATTTGCATC218ATGTTTTGGGTGGTGCTCTCAACCCGAATGCCGCATATTTGATCATTCGA

030130ABPB003071HT (ABPB) M9 root tips Malus domestica cDNA clone ABPB003071, mRNA sequence.
CN917629.1:312-331

AATTGATTTCAGAAATTCGTACTTTGCATC312ATGTTTTGGGTGGTGCTCTCAACCCGAATGCTGCATACCTGATCATTCGA

Mddb5012p15.y1 Mddb Malus domestica cDNA clone Mddb5012p15 5' similar to TR:O23944 O23944 CYSTATHIONINE GAMMA SYNTHASE, mRNA sequence.
CO865625.1:259-278

AATTGATTTCAGAAATTCGTACTTTGCATC259ATGTTTTGGGTGGTGCTCTCAACCCGAATGCTGCATACCTGATCATTCGA

USDA-FP_11125 Rough Lemon seedling root Citrus jambhiri cDNA clone RLR09_F04 5', mRNA sequence.
CO913031.1:299-318

AGTTAGTTACACAAATTCGTAATTTGCATC299ATGTTTTGGGTGGTGCTCTCAACCCGAATGCCGCGTATTTGATCATTCGA

Quercus robur root EST, clone SSH3PL1B07.
CU656669.1:9-28

TTTGCATC9ATGTTTTGGGTGGTGCTCTCAACCCGAATGCCGCATACCTGATCCTCCGA

Quercus robur leaves EST, clone SSH5PL2A08.
CU657659.1:9-28

TTTGCATC9ATGTTTTGGGTGGTGCTCTCAACCCGAATGCCGCATACCTGATCCTCCGA

Mdlv4-4050e14.y1 Mdlv4 Malus domestica cDNA clone Mdlv4-4050e14 5' similar to TR:O23944 O23944 CYSTATHIONINE GAMMA SYNTHASE, mRNA sequence.
CX024316.1:20-39

GAAATTCGTACTTTGCATC20ATGTTTTGGGTGGTGCTCTCAACCCGAATGCTGCATACCTGATCATTCGA

C04010G06SK FlavFr1 Citrus clementina cDNA clone C04010G06, mRNA sequence.
CX292122.1:149-168

AGTTAGTTACACAAATTCGTAATTTGCATC149ATGTTTTGGGTGGTGCTCTCAACCCGAATGCCGCATATTTGATCATTCGA

C06001H01SK FlavCurFr1 Citrus clementina x Citrus tangerina cDNA clone C06001H01, mRNA sequence.
CX297471.1:352-371

AGTTAGTTACACAAATTCGTAATTTGCATC352ATGTTTTGGGTGGTGCTCTCAACCCGAATGCCGCGTATTTGATCATTCGA

C06018F11SK RindPdig24 Citrus clementina cDNA clone C06018F11, mRNA sequence.
CX299082.1:347-366

AGTTAGTTACACAAATTCGTAATTTGCATC347ATGTTTTGGGTGGTGCTCTCAACCCGAATGCCGCGTATTTGATCATTCGA

Citrus unshiu mRNA, clone: BFC4A12, 3'-end sequence, expressed in flavedo.
DC885765.1:199-218

AGTTAGTTACACAAATTCGTAATTTGCATC199ATGTTTTGGGTGGTGCTCTCAACCCGAATGCCGCGTATTTGATCATTCGA

UCRCS11_06O18_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006O18, mRNA sequence.
DN621590.1:491-510

AGTTAGTTACACAAATTCGTAATTTGCATC491ATGTTTTGGGTGGTGCTCTCAACCCGAATGCCGCGTATTTGATCATTCGA

USDA-FP/ARO_12153 Star Ruby grapefruit temperature-conditioned flavedo cDNA Citrus x paradisi cDNA clone Cond-12_C04 5', mRNA sequence.
DN797285.1:289-308

AGTTAGTTACACAAATTCGTAATTTGCATC289ATGTTTTGGGTGGTGCTCTCAACCCGAATGCCGCGTATTTGATCATTCGA

Mdrtp1002A24.g1 Apple_EST_Mdrtp Malus domestica x Malus sieversii cDNA similar to emb|CAA04772.2| cystathionine gamma synthase [Fragaria vesca] emb|CAB57356.1| cystathionine gamma synthase [Fragaria v
DT042028.1:181-200

AATTGATTTCAGAAATTCGTACTTTGCATC181ATGTTTTGGGTGGTGCTCTCAACCCGAATGCTGCATACCTGATCATTCGA

KN0AAI1BB05FM2 AbsDev1 Citrus clementina cDNA 5', mRNA sequence.
DY258343.1:270-289

AGTTAGTTACACAAATTCGTAATTTGCATC270ATGTTTTGGGTGGTGCTCTCAACCCGAATGCCGCGTATTTGATCATTCGA

CS00-C1-100-043-H03-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
EY653389.1:759-778

AAGTAGTTACACAAATTCGTAATTTGCATC759ATGTTTTGGGTGGTGCTCTCAACCCGATGCCGCATATTTGATCATTCNAG

CS00-C1-100-114-A07-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
EY655934.1:609-628

AGTTAGTTACACAAATTCGTAATTTGCATC609ATGTTTTGGGTGGTGCTCTCAACCCGAATGCCGCGTATTTGATCATTCGA

CS00-C2-003-036-C06-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
EY687034.1:346-365

AGTTAGTTACACAAATTCGTAATTTGCATC346ATGTTTTGGGTGGTGCTCTCAACCCGAATGCCGCGTATTTGATCATTCGA

CS00-C3-700-032-E02-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
EY695071.1:311-330

AGTTAGTTACACAAATTCGTAATTTGCATC311ATGTTTTGGGTGGTGCTCTCAACCCGAATGCCGCATATTTGATCATTCGA

Quercus dentata isolate Qdleaves-2020 chromosome 2.
CP116445.1:93037882-93037901

AGTTGGTCACAGAAGTTCGTACTTTGCATC93037882ATGTTTTGGGTGGTGCTCTCAACCCGGTGAGACATTTTTATTAAGCATCT

Malus hybrid cultivar cultivar SH6 chromosome 9.
CP143366.1:3958782-3958801

AATTGATTTCAGAAATTCGTACTTTGCATC3958782ATGTTTTGGGTGGTGCTCTCAACCCGGTGAGTCATGTTTGTGGGTTGTAT

Malus hybrid cultivar cultivar SH6 chromosome 9.
CP143383.1:3164773-3164792

AATTGATTTCAGAAATTCGTACTTTGCATC3164773ATGTTTTGGGTGGTGCTCTCAACCCGGTGAGTCATGTTTGTGGGTTATAT

Malus sylvestris genome assembly, chromosome: 9.
OU696511.1:3539621-3539640

AATTGATTTCAGAAATTCGTACTTTGCATC3539621ATGTTTTGGGTGGTGCTCTCAACCCGGTGAGTCATGTTTGTGGGTTATAT

Malus domestica genome assembly, chromosome: 9.
OU696685.1:3606734-3606753

AATTGATTTCAGAAATTCGTACTTTGCATC3606734ATGTTTTGGGTGGTGCTCTCAACCCGGTGAGTCATGTTTGTGGGTTATAT

Malus domestica genome assembly, chromosome: 9.
OU744550.1:3645525-3645544

AATTGATTTCAGAAATTCGTACTTTGCATC3645525ATGTTTTGGGTGGTGCTCTCAACCCGGTGAGTCATGTTTGTGGGTTATAT

Malus domestica genome assembly, chromosome: 9.
OU744961.1:3619660-3619679

AATTGATTTCAGAAATTCGTACTTTGCATC3619660ATGTTTTGGGTGGTGCTCTCAACCCGGTGAGTCATGTTTGTGGGTTATAT

Malus domestica genome assembly, chromosome: 9.
OU744999.1:3502164-3502183

AATTGATTTCAGAAATTCGTACTTTGCATC3502164ATGTTTTGGGTGGTGCTCTCAACCCGGTGAGTCATGTTTGTGGGTTGTAT

Quercus robur genome assembly, chromosome: 2.
OW028766.1:79511741-79511760

AGTTGGTCACAGAAGTTCGTACTTTGCATC79511741ATGTTTTGGGTGGTGCTCTCAACCCGGTGAGACATTTTTATTAAGCATCT

Ailanthus altissima genome assembly, chromosome: 5.
OX327687.1:3143548-3143567

AGTTGATCACGCAAATTCGTAATTTGCATC3143548ATGTTTTGGGTGGTGCTCTCAACCCGGTGAGTGATTGTATTGGAAGACAA

Malus x robusta genome assembly, chromosome: 8.
OY720332.1:3630532-3630551

AATTGATTTCAGAAATTCGTACTTTGCATC3630532ATGTTTTGGGTGGTGCTCTCAACCCGGTGAGTCATGTTTGTGGGTTATAT

Pyrus communis genome assembly, chromosome: 7.
OY757074.1:2834986-2835005

AATTGATTTCAGAAATTCGTACTTTGCATC2834986ATGTTTTGGGTGGTGCTCTCAACCCGGTGAGTCATGTTTGTGGGTTATAT

Drosophila melanogaster strain sitter (fors) chromosome 3L.
CP023331.1:7894009-7894028

CACTCGTCAATAGCTTTTAAAATGGGTGAA7894009ATGTTTTGGGTGGTGCTCTCGAAGTCCAAAGCAATGCCATCCATTTCGGG

Drosophila melanogaster strain rover (forR) chromosome 3L.
CP023337.1:7893970-7893989

CACTCGTCAATAGCTTTTAAAATGGGTGAA7893970ATGTTTTGGGTGGTGCTCTCGAAGTCCAAAGCAATGCCATCCATTTCGGG

Drosophila melanogaster isolate dmeA_01_M0 chromosome 3L.
CP121933.1:7900918-7900937

CACTCGTCAATAGCTTTTAAAATGGGTGAA7900918ATGTTTTGGGTGGTGCTCTCGAAGTCCAAAGCAATGCCATCCATTTCGGG

Drosophila melanogaster isolate dmeA_15_M0 chromosome 3L.
CP121980.1:7900918-7900937

CACTCGTCAATAGCTTTTAAAATGGGTGAA7900918ATGTTTTGGGTGGTGCTCTCGAAGTCCAAAGCAATGCCATCCATTTCGGG

Drosophila melanogaster isolate dmeA_18_M0 chromosome 3L.
CP122009.1:7900918-7900937

CACTCGTCAATAGCTTTTAAAATGGGTGAA7900918ATGTTTTGGGTGGTGCTCTCGAAGTCCAAAGCAATGCCATCCATTTCGGG

Drosophila melanogaster isolate dmeA_25_F0 chromosome 3L.
CP122045.1:7900918-7900937