GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 18:26:09, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Lotus japonicus genomic DNA, chromosome 2, clone: LjT11D15, TM0065.
AP004907.1:25447-25466
CAGTGAGAGGAATGTGTTATGATGAGAGGT25447GAGAGCGCTTAACTAGCATTATTAGATCAAAATGAATGATAGATATTGAA
Sequence 4364 from Patent WO2014164014.
JD016643.1:5445-5464
CCAGAAAAGGCTGCAAGGATGAAAGAGTCA5445AATGCTAGTTAAGCGCTCTCCCTGCCACAGGGTGGAATAGCCACGAACCT
104_347_10803790_114_31377_382 Sorghum methylation-filtered library (LibID: 104) Sorghum bicolor genomic clone 10803790, genomic survey sequence.
CL158796.1:189-208
CCAGAAAAGGCTGCAAGGATGAAAGAGTCA189AATGCTAGTTAAGCGCTCTCCCTGCCACAGGGTGGAATAGCCACGAACCT
fsbb001f048i13f0 Sorghum methylation filtered library (LibID: 104) Sorghum bicolor genomic clone fsbb001f048i13, genomic survey sequence.
CW372573.1:68-87
CCAGAAAAGGCTGCAAGGATGAAAGAGTCA68AATGCTAGTTAAGCGCTCTCCCTGCCACAGGGTGGAATAGCCACGAACCT
Lotus japonicus B-129 DNA, chromosome 2, complete sequence.
AP022630.1:68053227-68053246
TTCAATATCTATCATTCATTTTGATCTAAT68053227AATGCTAGTTAAGCGCTCTCACCTCTCATCATAACACATTCCTCTCACTG
Sorghum bicolor cultivar Hongyingzi chromosome 3.
CP137827.1:71753440-71753459
CCAGAAAAGGCTGCAAGGATGAAAGAGTCA71753440AATGCTAGTTAAGCGCTCTCCCTGCCACAGGGTGGAATAGCCACGAACCA
Sorghum bicolor cultivar Huandiaonuo chromosome 3.
CP137837.1:72082211-72082230
CCAGAAAAGGCTGCAAGGATGAAAGAGTCA72082211AATGCTAGTTAAGCGCTCTCCCTGCCACAGGGTGGAATAGCCACGAACCA
Volucella zonaria genome assembly, chromosome: 4.
OZ014533.1:146473933-146473952
ATAGCAGAAATCAGCGAAAGTGTTATGAAA146473933AATGCTAGTTAAGCGCTCTCATTTGCGCCAAAGCCAGAGGTGACCACGTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GAGAGCGCTTAACTAGCATT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GAGAGCGCTTAACTAGCATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.100 | 0.092 | search_plus_done; http://172.18.8.135:50400/match?q=GAGAGCGCTTAACTAGCATT&k=0&no_gap=0&offset=0&limit=50
0.182 | 0.082 | search_minus_done; http://172.18.8.135:50400/match?q=AATGCTAGTTAAGCGCTCTC&k=0&no_gap=0&offset=0&limit=49
0.187 | 0.005 | cgi_end;

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