GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-13 02:16:29, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

P482 Whero seedling lambda ZapII cDNA library Pisum sativum cDNA clone P482 similar to Auxin regulated protein, mRNA sequence.
AA427337.1:890-913
TATGGTACTATTTCAAACAAATTAAGCTTT890GAGATGTTTTTTAGTTATGAACAGAAACGATAATCACTTT
TSA: Pisum sativum Ps_contig_mira-ass_3653 mRNA sequence.
JI900485.1:326-349
TATGGTACTATTTCAAACAAATTAAGCTTT326GAGATGTTTTTTAGTTATGAACAGAAACGATAATCACTTTAAATTATGTGTTTC
TSA: Pisum sativum contig00837.PisaPYK9 mRNA sequence.
JR951571.1:73-96
GAAACACATAATTTAAAGTGATTATCGTTT73CTGTTCATAACTAAAAAACATCTCAAAGCTTAATTTGTTTGAAATAGTACCATA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GAGATGTTTTTTAGTTATGAACAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GAGATGTTTTTTAGTTATGAACAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.105 | 0.096 | search_plus_done; http://172.18.8.135:50400/match?q=GAGATGTTTTTTAGTTATGAACAG&k=0&no_gap=0&offset=0&limit=50
0.133 | 0.028 | search_minus_done; http://172.18.8.135:50400/match?q=CTGTTCATAACTAAAAAACATCTC&k=0&no_gap=0&offset=0&limit=48
0.133 | 0.001 | cgi_end;

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