GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 03:16:16, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

bacterium isolate 57a1b92f-bc4a-4fd6-9813-ca89f61bdd80 genome assembly, chromosome: 7.
OY771370.1:288930-288949
CTGGCTGAATGGCAGGGCGCCGAAATGATA288930GAGGACGGTTTCGATTCTGACTATGACTGGAACCTGTATCATCGGATGAA
Arachis hypogaea cultivar Shitouqi chromosome A02.
CP030984.1:4493134-4493153
TAAGGATGATTCTAAATGAAAACTTACGTT4493134GAGGACGGTTTCGATTCTGATTCTAAACGTTAGGAACCAAAACAATACTT
Arachis hypogaea cultivar Shitouqi chromosome A03.
CP030985.1:96496498-96496517
TAAGGACGATTCTAAATAAAAAATTACGTT96496498GAGGACGGTTTCGATTCTGATCCTAAACGTTAGGGACCAAAATAATACTT
Arachis hypogaea cultivar Shitouqi chromosome B07.
CP030999.1:30933802-30933821
TAAGGACGATTCTAAATAAAAAATTACGTT30933802GAGGACGGTTTCGATTCTGACCTTAAACATTAGGGACCAAAATAATAATT
Arachis ipaensis cultivar K30076 chromosome 07.
CP049898.1:31986291-31986310
TAAGGACGATTCTAAATAAAAAATTACGTT31986291GAGGACGGTTTCGATTCTGACCTTAAACATTAGGGACCAAAATAATAATT
Arachis hypogaea cultivar Shitouqi chromosome A02.
CP030984.1:5665445-5665464
AAGTATTGTTTTGGTCCCTAACGTTAAGGG5665445TCAGAATCGAAACCGTCCTCAACGTAATTTTTGATTTAGAATTATCCTTA
Arachis hypogaea cultivar Shitouqi chromosome A09.
CP030991.1:74180913-74180932
AAGTATTGTTTTGGTCCCTAGCGTTGAGGG74180913TCAGAATCGAAACCGTCCTCAACGTAATTTTTTATTTAGAATCATCCTTA
Arachis hypogaea cultivar Shitouqi chromosome B02.
CP030994.1:96712825-96712844
AAGTATTATTTTGGTCTCTAATGTTGAGGG96712825TCAGAATCGAAACCGTCCTCAACGTAATTTTCGATTTAGAATCATCCTAA
Arachis hypogaea cultivar Shitouqi chromosome B02.
CP030994.1:98266491-98266510
GAGTATTGTTTTGGTCCCTAATATTTAGGG98266491TCAGAATCGAAACCGTCCTCAATGTAATTTTTAATTTAGAATCATCCTTA
Arachis hypogaea cultivar Shitouqi chromosome B03.
CP030995.1:112705008-112705027
AAATATTATTTTGGTCCCTAACGTTGAGGG112705008TCAGAATCGAAACCGTCCTCAATGTAATTTTCGATTTAGAATCATCCTTA
Arachis hypogaea cultivar Shitouqi chromosome B07.
CP030999.1:4670216-4670235
AAGTATTATTTTGGTCCCTAATATTGAAGG4670216TCAGAATCGAAACCGTCCTCAACGTAATTTTTTATTTAGAATAATTTTTA
Arachis ipaensis cultivar K30076 chromosome 02.
CP049893.1:95978315-95978334
AAGTATTATTTTGGTCTCTAATGTTGAGGG95978315TCAGAATCGAAACCGTCCTCAACGTAATTTTCGATTTAGAATCATCCTAA
Arachis ipaensis cultivar K30076 chromosome 02.
CP049893.1:97524813-97524832
GAGTATTGTTTTGGTCCCTAATATTTAGGG97524813TCAGAATCGAAACCGTCCTCAATGTAATTTTTAATTTAGAATCATCCTTA
Arachis ipaensis cultivar K30076 chromosome 03.
CP049894.1:110363804-110363823
AAATATTATTTTGGTCCCTAACGTTGAGGG110363804TCAGAATCGAAACCGTCCTCAATGTAATTTTCGATTTAGAATCATCCTTA
Arachis ipaensis cultivar K30076 chromosome 07.
CP049898.1:5334620-5334639
AAGTATTATTTTGGTCCCTAATATTGAAGG5334620TCAGAATCGAAACCGTCCTCAACGTAATTTTTTATTTAGAATAATTTTAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GAGGACGGTTTCGATTCTGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GAGGACGGTTTCGATTCTGA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.111 | 0.103 | search_plus_done; http://172.18.8.135:50400/match?q=GAGGACGGTTTCGATTCTGA&k=0&no_gap=0&offset=0&limit=50
0.135 | 0.024 | search_minus_done; http://172.18.8.135:50400/match?q=TCAGAATCGAAACCGTCCTC&k=0&no_gap=0&offset=0&limit=45
0.141 | 0.006 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).