GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 01:48:02, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Solanum melongena mRNA, clone: PER08E09, 5'end, expressed in pericarp at 10d after anthesis.
FS042057.1:48-67
TGGATTTATCGGTTCTCATTTATGTGAAAA48GCTCATGTCGGAAACTCCTCATAAAGTACTCGCCGTCGATGTTTATAGTG
Solanum melongena mRNA, clone: SmFL31J20, 5'end.
FS087756.1:174-193
TGGATTTATCGGTTCTCATTTATGTGAAAA174GCTCATGTCGGAAACTCCTCATAAAGTACTCGCCGTCGATGTTTATAGTG
Solanum torvum mRNA, clone: TVL04M14, 5'end, expressed in leaf at vegetative stage, 2 months after germination.
FS100358.1:180-199
TGGATTTATCGGTTCTCATTTATGTGAAAA180GCTCATGTCGGAAACTCCTCATAAAGTACTCGCCGTCGATGTTTACAGTG
Solanum torvum mRNA, clone: TVR37G07, 5'end, expressed in root at vegetative stage, 2 months after germination.
FS126139.1:178-197
TGGATTTATCGGTTCTCATTTATGTGAAAA178GCTCATGTCGGAAACTCCTCATAAAGTACTCGCCGTCGATGTTTACAGTG
Solanum torvum mRNA, clone: TVR37L09, 5'end, expressed in root at vegetative stage, 2 months after germination.
FS126299.1:148-167
TGGATTTATCGGTTCTCATTTATGTGAAAA148GCTCATGTCGGAAACTCCTCATAAAGTACTCGCCGTCGATGTTTACAGTG
StFL10_79 library StFL Solanum torvum cDNA, mRNA sequence.
JK265476.1:132-151
TGGATTTATCGGTTCTCATTTATGTGAAAA132GCTCATGTCGGAAACTCCTCATAAAGTACTCGCCGTCGATGTTTACAGTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GAGGAGTTTCCGACATGAGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GAGGAGTTTCCGACATGAGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.103 | 0.094 | search_plus_done; http://172.18.8.135:50400/match?q=GAGGAGTTTCCGACATGAGC&k=0&no_gap=0&offset=0&limit=50
0.688 | 0.585 | search_minus_done; http://172.18.8.135:50400/match?q=GCTCATGTCGGAAACTCCTC&k=0&no_gap=0&offset=0&limit=50
0.692 | 0.004 | cgi_end;

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