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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-17 03:51:17, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

5_Tge_b3v08.
OE840385.1:182666-182685
CTTACCTGGGTTTGGACACGTTGATAGGAT182666GAGTGTGGATCACGTGAGGAAGCACATATATGAAGGTAGAGTGTGTGGGG
USDA-FP_123000-969 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-68_B07 5', mRNA sequence.
CF508466.1:37-56
TCTGCGCTTCCACCCGCAAAAACCATCTCC37TCCTCACGTGATCCACACTCACTCTGAATCTCGCAGATCGTGATTGGCAT
USDA-FP_124000-159 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-6_C05 5', mRNA sequence.
CF508656.1:31-50
TCTGCGCTTCCACCCGCAAAAACCATCTCC31TCCTCACGTGATCCACACTCACTCTGAATCTCGCAGATCGTGATTGGCAT
USDA-FP_124000-519 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-73_E03 5', mRNA sequence.
CF509014.1:37-56
TCTGCGCTTCCACCCGCAAAAACCATCTCC37TCCTCACGTGATCCACACTCACTCTGAATCTCGCAGATCGTGATTGGCAT
UCRCS07_11A08_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11A08-A15-1-7.g, mRNA sequence.
CX043432.1:30-49
CTGCGCTTCCACCCGCAAAAACCATCTCC30TCCTCACGTGATCCACACTCACTCTGAATCTCGCAGATCGTGATTGGCAT
UCRCS11_03D13_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0003D13, mRNA sequence.
DN618922.1:26-45
GCTTCCACCCGCAAAAACCATCTCC26TCCTCACGTGATCCACACTCACTCTGAATCTCGCAGATCGTGATTGGCAT
KN0AAP4YI18FM1 Fruit-TF Citrus clementina cDNA 5', mRNA sequence.
DY261953.1:17-36
CGCAAAAACCATCTTC17TCCTCACGTGATCCACACTCACTCTGAATCTCGCAGATCGTGATTGGCAT
CS00-C3-700-066-B09-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
EY697945.1:62-81
TCTGCGCTTCCACCCGCAAAAACCATCTCC62TCCTCACGTGATCCACACTCACTCTGAATCTCGCAGATCGTGATTGGCAT
CS00-C3-700-077-C03-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
EY698910.1:49-68
TCTGCGCTTCCACCCGCAAAAACCATCTCC49TCCTCACGTGATCCACACTCACTCTGAATCTCGCAGATCGTGATTGGCAT
CS00-C3-701-062-E05-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
EY706892.1:49-68
TCTGCGCTTCCACCCGCAAAAACCATCTCC49TCCTCACGTGATCCACACTCACTCTGAATCTCGCAGATCGTGATTGGCAT
CS00-C3-701-072-H11-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
EY707819.1:38-57
TCTGCGCTTCCACCCGCAAAAACCATCTCC38TCCTCACGTGATCCACACTCACTCTGAATCTCGCAGATCGTGATTGGCAT
CS00-C3-702-071-F02-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
EY716799.1:47-66
TTCTGCGCTTCCCCCGCAAAAACCATCTCC47TCCTCACGTGATCCACACTCACTCTGAATCTCGCAGATCGTGATTGGCAT
CS00-C3-702-102-E02-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
EY719136.1:54-73
TCTGCGCTTCCACCCGCAAAAACCATCTCC54TCCTCACGTGATCCACACTCACTCTGAATCTCGCAGATCGTGATTGGCAT
CS00-C5-003-055-D01-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
EY753130.1:76-95
ACGCGTCCGCACCCGCAACCCCTTTTCTCC76TCCTCACGTGATCCACACTCACTCTGAATCTCGCATATCGTGATTGGCAT
CR05-C1-100-020-B10-CT.F Mandarin leaf, greenhouse plant Citrus reticulata cDNA, mRNA sequence.
EY759806.1:26-45
CACGCGTCCGGCAAAAACCATCTCC26TCCTCACGTGATCCACACTCACTCTGAATCTCGCAGATCGTGATTGGCAT
CR05-C3-700-123-B10-CT.F Mandarin fruit, development stadium (1 of 3) Citrus reticulata cDNA, mRNA sequence.
EY790434.1:37-56
TTCTGCGCTTCCCCCCTTTAAACCATCTCC37TCCTCACGTGATCCACACTCACTCTCAATCTCGCAGATCGTGATTGGCAT
CR05-C3-700-142-A04-CT.F Mandarin fruit, development stadium (1 of 3) Citrus reticulata cDNA, mRNA sequence.
EY792394.1:14-33
CAAAACCAACTCC14TCCTCACGTGATCCACACTCACTCTGAATCTCACAAATCGTGATTGGCGT
KN0AAP4YI18FM1 TF Citrus clementina cDNA clone KN0AAP4YI18, mRNA sequence.
FC927952.1:17-36
CGCAAAAACCATCTTC17TCCTCACGTGATCCACACTCACTCTGAATCTCGCAGATCGTGATTGGCAT
C34106E05EF PostHarvP1 Citrus clementina cDNA clone C34106E05, mRNA sequence.
FC931562.1:50-69
TCTGCGCTTCCACCCGCAAAAACCATCTCC50TCCTCACGTGATCCACACTCACTCTGAATCTCGCAGATCGTGATTGGCAT
Citrus sinensis genome assembly, chromosome: 2.
OY754319.1:20890410-20890429
TCTGCGCTTCCACCCGCAAAAACCATCTCC20890410TCCTCACGTGATCCACACTCACTCTGAATCTCGCAGGTAAATTCCATGAT

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